Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 AL627224.1-201ENST00000448334 444 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 RPL32P14-201ENST00000463196 378 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 RN7SL790P-201ENST00000474043 298 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 AC083795.1-201ENST00000491760 320 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.81□□□□□ -1.64
HOXA1P49639 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 RFPL4AP3-201ENST00000515267 345 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 ODF1-202ENST00000518835 368 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 AP001000.1-201ENST00000526843 742 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 TDGP1-201ENST00000543961 1229 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC091057.3-201ENST00000602684 733 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 AP001823.1-201ENST00000604056 1003 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 AC004477.3-201ENST00000614061 590 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC091046.2-201ENST00000620775 665 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 AC008993.2-201ENST00000631744 806 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 FRG1DP-201ENST00000635586 771 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 EIF3EP1-201ENST00000433978 1316 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 OR9K1P-201ENST00000326513 941 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 OR56A4-201ENST00000330728 1209 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 RNFT1P3-201ENST00000340898 1052 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 MIR16-2-201ENST00000362117 81 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 RN7SKP184-201ENST00000362348 333 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 RNU105B-201ENST00000364478 208 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 RNA5SP85-201ENST00000365378 119 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 PRELID1P1-201ENST00000403549 660 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 BX119321.1-201ENST00000428912 797 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 Z80107.1-201ENST00000436830 412 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 RPS18P1-201ENST00000447840 458 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC016027.4-201ENST00000450866 277 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC104164.1-201ENST00000460282 590 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC063955.1-201ENST00000462872 685 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 NIP7P2-201ENST00000485801 544 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC108729.1-201ENST00000487812 947 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 HMGN1P17-201ENST00000513734 295 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 HAUS1P3-201ENST00000523909 662 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 OR4A17P-201ENST00000526032 904 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC024940.3-201ENST00000538551 316 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 OTX2-203ENST00000554559 715 ntTSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 YWHAZP1-201ENST00000556286 722 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC090666.1-201ENST00000578241 445 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC127024.5-201ENST00000580085 462 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.8□□□□□ -1.64
HOXA1P49639 AL589765.6-201ENST00000601909 549 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC023762.1-201ENST00000603280 584 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms