Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 AC068870.1-201ENST00000563737 2455 ntBASIC5.13□□□□□ -1.59
SOX3P41225 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 MT-RNR2-201ENST00000387347 1559 ntBASIC5.12□□□□□ -1.59
SOX3P41225 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 MIR551A-201ENST00000385042 96 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AL607077.1-201ENST00000401718 499 ntBASIC5.12□□□□□ -1.59
SOX3P41225 GABARAPL3-201ENST00000412799 354 ntBASIC5.12□□□□□ -1.59
SOX3P41225 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 Z93019.1-201ENST00000416450 973 ntBASIC5.12□□□□□ -1.59
SOX3P41225 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.12□□□□□ -1.59
SOX3P41225 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.12□□□□□ -1.59
SOX3P41225 NANOGP9-201ENST00000439890 892 ntBASIC5.12□□□□□ -1.59
SOX3P41225 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 LINC02210-201ENST00000444561 288 ntBASIC5.12□□□□□ -1.59
SOX3P41225 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.12□□□□□ -1.59
SOX3P41225 AL513343.1-201ENST00000451818 792 ntBASIC5.12□□□□□ -1.59
SOX3P41225 CBX1P2-201ENST00000453841 458 ntBASIC5.12□□□□□ -1.59
SOX3P41225 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.12□□□□□ -1.59
SOX3P41225 AL133445.1-201ENST00000467051 452 ntBASIC5.12□□□□□ -1.59
SOX3P41225 RPS26P39-201ENST00000469206 341 ntBASIC5.12□□□□□ -1.59
SOX3P41225 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 AC090638.1-201ENST00000498296 909 ntBASIC5.12□□□□□ -1.59
SOX3P41225 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 RN7SKP99-201ENST00000517028 307 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.12□□□□□ -1.59
SOX3P41225 IGKV2-18-201ENST00000522607 343 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AC027026.1-201ENST00000532323 742 ntBASIC5.12□□□□□ -1.59
SOX3P41225 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.12□□□□□ -1.59
SOX3P41225 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.12□□□□□ -1.59
SOX3P41225 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.12□□□□□ -1.59
SOX3P41225 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 NPM1P45-201ENST00000583151 559 ntBASIC5.12□□□□□ -1.59
SOX3P41225 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AC010245.2-201ENST00000606908 1167 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AC007620.3-201ENST00000608131 497 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AL512624.1-201ENST00000613638 469 ntBASIC5.12□□□□□ -1.59
SOX3P41225 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.12□□□□□ -1.59
SOX3P41225 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SOX3P41225 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.12□□□□□ -1.59
SOX3P41225 AC006206.1-201ENST00000544842 3387 ntBASIC5.12□□□□□ -1.59
SOX3P41225 AC144833.1-201ENST00000567953 4089 ntBASIC5.12□□□□□ -1.59
SOX3P41225 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.12□□□□□ -1.59
SOX3P41225 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.12□□□□□ -1.59
SOX3P41225 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 HSPD1P7-201ENST00000447985 1686 ntBASIC5.12□□□□□ -1.59
SOX3P41225 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SOX3P41225 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.11□□□□□ -1.59
SOX3P41225 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.11□□□□□ -1.59
SOX3P41225 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.11□□□□□ -1.59
SOX3P41225 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 AL121886.1-201ENST00000358609 435 ntBASIC5.11□□□□□ -1.59
SOX3P41225 RN7SKP162-201ENST00000363605 345 ntBASIC5.11□□□□□ -1.59
SOX3P41225 RNU6-670P-201ENST00000364312 104 ntBASIC5.11□□□□□ -1.59
SOX3P41225 RN7SKP6-201ENST00000364795 319 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AL358178.1-201ENST00000407698 397 ntBASIC5.11□□□□□ -1.59
SOX3P41225 RNU6-564P-201ENST00000410983 104 ntBASIC5.11□□□□□ -1.59
SOX3P41225 NPM1P4-201ENST00000414095 812 ntBASIC5.11□□□□□ -1.59
SOX3P41225 SPRYD7P1-201ENST00000443861 570 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AC092106.1-201ENST00000444291 373 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AL596266.1-201ENST00000448132 400 ntBASIC5.11□□□□□ -1.59
SOX3P41225 SNORD125-201ENST00000459538 96 ntBASIC5.11□□□□□ -1.59
SOX3P41225 EIF1P7-201ENST00000487533 337 ntBASIC5.11□□□□□ -1.59
SOX3P41225 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.11□□□□□ -1.59
SOX3P41225 BX510359.5-201ENST00000515651 304 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.11□□□□□ -1.59
SOX3P41225 AC138832.1-201ENST00000522871 556 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms