Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.9□□□□□ -1.31
HOXC9P31274 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.9□□□□□ -1.31
HOXC9P31274 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HOXC9P31274 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.9□□□□□ -1.31
HOXC9P31274 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.31
HOXC9P31274 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HOXC9P31274 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
HOXC9P31274 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 MAPK10-338ENST00000641647 3362 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
HOXC9P31274 AC092681.1-201ENST00000297369 291 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.89□□□□□ -1.31
HOXC9P31274 RNU1-74P-201ENST00000384108 171 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
HOXC9P31274 H3F3BP1-201ENST00000440551 403 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC6.89□□□□□ -1.31
HOXC9P31274 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.89□□□□□ -1.31
HOXC9P31274 GLUD1P3-202ENST00000508551 200 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.89□□□□□ -1.31
HOXC9P31274 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.89□□□□□ -1.31
HOXC9P31274 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.89□□□□□ -1.31
HOXC9P31274 GSTP1P1-201ENST00000548078 319 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC6.89□□□□□ -1.31
HOXC9P31274 AC011626.1-201ENST00000604710 562 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.89□□□□□ -1.31
HOXC9P31274 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.89□□□□□ -1.31
HOXC9P31274 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
HOXC9P31274 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
HOXC9P31274 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.88□□□□□ -1.31
HOXC9P31274 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
HOXC9P31274 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 MIR589-201ENST00000385238 99 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.88□□□□□ -1.31
HOXC9P31274 AL590139.1-201ENST00000416267 400 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.88□□□□□ -1.31
HOXC9P31274 AC009220.1-201ENST00000451614 275 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 AC093890.1-201ENST00000502554 540 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 MTCO3P42-201ENST00000509488 518 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 OR51K1P-201ENST00000510214 950 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.88□□□□□ -1.31
HOXC9P31274 MTCO3P39-201ENST00000514812 518 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.88□□□□□ -1.31
HOXC9P31274 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 AC010809.3-201ENST00000621310 641 ntBASIC6.88□□□□□ -1.31
HOXC9P31274 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.88□□□□□ -1.31
HOXC9P31274 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
HOXC9P31274 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.88□□□□□ -1.31
HOXC9P31274 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
HOXC9P31274 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HOXC9P31274 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.87□□□□□ -1.31
HOXC9P31274 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.87□□□□□ -1.31
HOXC9P31274 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.87□□□□□ -1.31
HOXC9P31274 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.87□□□□□ -1.31
HOXC9P31274 AC004076.2-201ENST00000620532 3323 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
HOXC9P31274 RN7SKP185-201ENST00000362813 326 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
HOXC9P31274 AP002530.1-201ENST00000405705 684 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AC017019.1-201ENST00000426129 261 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 BX323845.1-201ENST00000432417 179 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AL161722.2-201ENST00000434731 981 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AC011753.3-201ENST00000443436 406 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 MORF4L1P4-201ENST00000450245 976 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AC020779.1-201ENST00000478757 796 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AC008897.1-201ENST00000494006 347 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 TRIM36-IT1-201ENST00000503723 881 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.87□□□□□ -1.31
HOXC9P31274 MRPS33P2-201ENST00000507850 322 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.87□□□□□ -1.31
HOXC9P31274 AC087821.1-201ENST00000623639 567 ntBASIC6.87□□□□□ -1.31
HOXC9P31274 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
HOXC9P31274 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms