Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
BDNFP23560 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BDNFP23560 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
BDNFP23560 AC140134.1-201ENST00000511830 3544 ntBASIC6.1□□□□□ -1.43
BDNFP23560 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
BDNFP23560 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.1□□□□□ -1.43
BDNFP23560 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BDNFP23560 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
BDNFP23560 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.1□□□□□ -1.43
BDNFP23560 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
BDNFP23560 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
BDNFP23560 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
BDNFP23560 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
BDNFP23560 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 SNORD1C-201ENST00000363315 78 ntBASIC6.09□□□□□ -1.43
BDNFP23560 BMS1P3-201ENST00000372011 932 ntBASIC6.09□□□□□ -1.43
BDNFP23560 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
BDNFP23560 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 RNU6-883P-201ENST00000384597 107 ntBASIC6.09□□□□□ -1.43
BDNFP23560 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
BDNFP23560 AL512430.2-201ENST00000406786 339 ntBASIC6.09□□□□□ -1.43
BDNFP23560 OR2AT2P-201ENST00000413438 905 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.09□□□□□ -1.43
BDNFP23560 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.09□□□□□ -1.43
BDNFP23560 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.09□□□□□ -1.43
BDNFP23560 RPS26P47-201ENST00000427219 348 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.09□□□□□ -1.43
BDNFP23560 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.09□□□□□ -1.43
BDNFP23560 RPS3AP38-201ENST00000435889 763 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC096775.1-201ENST00000437724 448 ntBASIC6.09□□□□□ -1.43
BDNFP23560 ELOCP10-201ENST00000440624 327 ntBASIC6.09□□□□□ -1.43
BDNFP23560 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC6.09□□□□□ -1.43
BDNFP23560 HMGB1P4-201ENST00000455362 567 ntBASIC6.09□□□□□ -1.43
BDNFP23560 RPS27AP2-201ENST00000457576 465 ntBASIC6.09□□□□□ -1.43
BDNFP23560 RNU6-1218P-201ENST00000458990 108 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.09□□□□□ -1.43
BDNFP23560 OR7E157P-201ENST00000494376 911 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.09□□□□□ -1.43
BDNFP23560 RFPL4AP5-201ENST00000514977 504 ntBASIC6.09□□□□□ -1.43
BDNFP23560 RNU6-1308P-201ENST00000516817 103 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.09□□□□□ -1.43
BDNFP23560 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC6.09□□□□□ -1.43
BDNFP23560 AC021483.2-201ENST00000567415 758 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC6.09□□□□□ -1.43
BDNFP23560 ELOCP34-201ENST00000604436 327 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AL391834.1-201ENST00000609609 560 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AC004477.3-201ENST00000614061 590 ntBASIC6.09□□□□□ -1.43
BDNFP23560 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
BDNFP23560 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
BDNFP23560 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
BDNFP23560 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.09□□□□□ -1.44
BDNFP23560 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
BDNFP23560 AC090971.4-201ENST00000560291 1800 ntBASIC6.09□□□□□ -1.44
BDNFP23560 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 AC096656.1-201ENST00000623826 1364 ntBASIC6.08□□□□□ -1.44
BDNFP23560 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC6.08□□□□□ -1.44
BDNFP23560 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 SRRM1P3-201ENST00000426911 2678 ntBASIC6.08□□□□□ -1.44
BDNFP23560 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 AC093535.2-201ENST00000624769 2326 ntBASIC6.08□□□□□ -1.44
BDNFP23560 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 CROT-204ENST00000442291 1993 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.08□□□□□ -1.44
BDNFP23560 RNA5SP46-201ENST00000362370 120 ntBASIC6.08□□□□□ -1.44
BDNFP23560 RN7SKP224-201ENST00000364140 325 ntBASIC6.08□□□□□ -1.44
BDNFP23560 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
BDNFP23560 RPL23AP17-201ENST00000401064 499 ntBASIC6.08□□□□□ -1.44
BDNFP23560 RMRPP5-201ENST00000411156 267 ntBASIC6.08□□□□□ -1.44
BDNFP23560 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 TRAPPC2P10-201ENST00000415662 323 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 RPL12P16-201ENST00000431098 498 ntBASIC6.08□□□□□ -1.44
BDNFP23560 RPS26P4-201ENST00000431743 355 ntBASIC6.08□□□□□ -1.44
BDNFP23560 BX679664.2-201ENST00000439282 283 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 SUMO1P1-201ENST00000497904 306 ntBASIC6.08□□□□□ -1.44
BDNFP23560 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.08□□□□□ -1.44
BDNFP23560 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.08□□□□□ -1.44
BDNFP23560 IGKV2-19-201ENST00000518132 283 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms