Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 AL356276.2-201ENST00000435919 558 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 TAAR4P-201ENST00000454843 1039 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.18□□□□□ -1.58
COL6A3P12111 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 AC006115.2-201ENST00000596823 202 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.18□□□□□ -1.58
COL6A3P12111 AC022034.1-201ENST00000512867 2156 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 HIVEP2-201ENST00000012134 9755 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 SPRR2C-201ENST00000290702 219 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL6A3P12111 AL645608.4-201ENST00000423619 154 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 AL133547.1-201ENST00000448546 220 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 AC007967.1-201ENST00000455422 1159 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 AC005252.1-201ENST00000604518 1063 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 AP003400.3-201ENST00000624904 346 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC5.18□□□□□ -1.58
COL6A3P12111 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 AC018644.1-201ENST00000429934 551 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 TPT1P3-201ENST00000492841 512 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.18□□□□□ -1.58
COL6A3P12111 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.18□□□□□ -1.58
COL6A3P12111 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A3P12111 AL049536.1-201ENST00000625043 744 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL6A3P12111 AC005261.4-201ENST00000600047 1385 ntBASIC5.18□□□□□ -1.58
COL6A3P12111 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL6A3P12111 AC018628.1-201ENST00000624147 3819 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.17□□□□□ -1.58
COL6A3P12111 TEX14-202ENST00000349033 4773 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.17□□□□□ -1.58
COL6A3P12111 PMS2P3-207ENST00000529061 717 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 AL163952.1-202ENST00000569625 600 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 AC015908.5-201ENST00000623289 343 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 NCLP2-201ENST00000416078 1462 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 IGLVIV-65-201ENST00000517313 360 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A3P12111 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.17□□□□□ -1.58
COL6A3P12111 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 AL357559.1-201ENST00000622228 274 ntBASIC5.17□□□□□ -1.58
COL6A3P12111 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 HERC2P3-204ENST00000426501 5995 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A3P12111 MR1-205ENST00000434571 7479 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A3P12111 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.17□□□□□ -1.58
COL6A3P12111 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A3P12111 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC5.16□□□□□ -1.58
COL6A3P12111 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL6A3P12111 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 AC007389.2-201ENST00000434630 306 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 OSTCP1-201ENST00000455507 450 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 AC041039.1-201ENST00000485656 536 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 AC015795.1-201ENST00000513669 327 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 MYO15A-201ENST00000205890 11863 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 AP000547.3-204ENST00000588548 2523 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.16□□□□□ -1.58
COL6A3P12111 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.16□□□□□ -1.58
COL6A3P12111 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 PTMAP5-201ENST00000393073 333 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.16□□□□□ -1.58
COL6A3P12111 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 RN7SL810P-201ENST00000493031 276 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 OR7E25P-202ENST00000641088 5937 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms