Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC097063.1-201ENST00000426714 1797 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 SNORA16A-201ENST00000384342 137 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC009804.1-201ENST00000400949 179 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 PRUNEP1-201ENST00000425846 705 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 RPL7P56-201ENST00000429441 717 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 CFL1P1-202ENST00000432948 411 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC073072.2-201ENST00000447425 348 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 NPM1P19-201ENST00000450070 712 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AL731537.2-201ENST00000561565 951 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC090079.2-201ENST00000575289 768 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 RPL21P136-201ENST00000605378 396 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 HPVC1-201ENST00000629899 1198 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 CR382285.2-201ENST00000624662 1495 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.89□□□□□ -1.47
SNX9Q9Y5X1 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 MRRFP1-201ENST00000435941 1675 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RNU1-77P-201ENST00000390868 162 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RN7SKP17-201ENST00000411242 351 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RIMKLBP2-201ENST00000424737 654 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RPS6P14-201ENST00000425165 719 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 CYCSP12-201ENST00000437729 300 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 SDR42E1P3-201ENST00000438345 502 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 IGBP1P3-201ENST00000447449 1000 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AZGP1P2-201ENST00000454506 345 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RPL7P45-201ENST00000455851 743 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 COL6A4P2-205ENST00000509855 506 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AC025857.2-201ENST00000602711 238 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AL512624.1-201ENST00000613638 469 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 MIR6826-201ENST00000617808 98 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 AL139254.3-201ENST00000641097 674 ntBASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SNX9Q9Y5X1 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SNX9Q9Y5X1 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms