Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 RN7SKP114-201ENST00000410327 279 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AL445687.2-201ENST00000458156 728 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 CYCSP34-201ENST00000458172 304 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC020779.1-201ENST00000478757 796 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 KPNA2P3-201ENST00000584190 848 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AC024220.1-201ENST00000603675 484 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 AL161756.2-201ENST00000604597 246 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 ZNF840P-201ENST00000504759 1996 ntBASIC4.95□□□□□ -1.62
VPS13AQ96RL7 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS13AQ96RL7 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 RBPJP2-201ENST00000618187 1444 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AK3P4-201ENST00000504283 583 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 APBB2-201ENST00000295974 8972 ntAPPRIS ALT1 TSL 2 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 NSF-206ENST00000575068 2667 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 SNORA70C-201ENST00000384538 135 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 OR4A43P-201ENST00000532938 908 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC090948.1-201ENST00000607464 549 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AL731532.1-201ENST00000623972 4236 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 GTF2IP5-201ENST00000414608 731 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 NRBF2P3-201ENST00000432731 865 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 SCARNA10-201ENST00000459255 330 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC020890.1-201ENST00000491837 504 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 AC069200.1-201ENST00000609511 323 ntBASIC4.94□□□□□ -1.62
VPS13AQ96RL7 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
VPS13AQ96RL7 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC025031.4-201ENST00000621248 3271 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 CYCSP19-201ENST00000411715 316 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 RCC2P2-201ENST00000422174 918 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 VN1R34P-201ENST00000447387 883 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC079168.1-201ENST00000458741 345 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 MTCO1P35-201ENST00000515270 228 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 SCARNA13-201ENST00000516672 275 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 SNX18P1Y-201ENST00000616231 511 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 RNA5SP196-201ENST00000625967 102 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 TTC41P-205ENST00000551270 3963 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 RPL34P6-201ENST00000432390 345 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC097173.1-201ENST00000505862 819 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 MIR3138-201ENST00000585238 82 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 RPL7P50-201ENST00000600588 727 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 AL138960.1-201ENST00000613838 513 ntBASIC4.93□□□□□ -1.62
VPS13AQ96RL7 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
VPS13AQ96RL7 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms