Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ZSWIM5P3-201ENST00000511265 2743 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC025040.2-201ENST00000558657 1852 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 OR8D4-202ENST00000641687 2904 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 CNPY1-204ENST00000636446 1637 ntAPPRIS P5 TSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RNU6-374P-201ENST00000364146 108 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RNU6-1251P-201ENST00000364502 107 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RNU6-185P-201ENST00000384421 107 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 GSTA9P-201ENST00000406231 611 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 MIR548I3-201ENST00000408378 149 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 MIR548I1-201ENST00000408810 149 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RNU4-55P-201ENST00000410731 137 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RNA5SP280-201ENST00000411230 115 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC245054.2-201ENST00000415639 319 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 OFD1P4Y-201ENST00000455273 1179 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RPL7P19-201ENST00000469948 618 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RN7SL350P-201ENST00000492591 299 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC106822.1-201ENST00000502647 526 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC107222.1-201ENST00000510899 637 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 snoU109.5-201ENST00000516231 132 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 Y_RNA.711-201ENST00000516993 102 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RNU6-430P-201ENST00000517078 107 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RN7SKP40-201ENST00000517211 242 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 OR4A40P-201ENST00000533878 948 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC138207.8-204ENST00000579588 527 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC097381.3-201ENST00000608962 462 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC234782.5-201ENST00000617723 324 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 LRRC37A9P-201ENST00000603850 5376 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 NRG3-206ENST00000545131 2713 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 NACA-216ENST00000550952 2922 ntTSL 2 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC104118.1-201ENST00000607625 1589 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 MAPK10-279ENST00000641157 2449 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 AC067945.1-201ENST00000342609 618 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 SNORA63.7-201ENST00000365579 123 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 CISD1P1-201ENST00000393907 327 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 RN7SKP221-201ENST00000410420 301 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 RNU6-248P-201ENST00000410720 107 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 RN7SKP85-201ENST00000411349 318 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 RPL23AP39-201ENST00000415533 405 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 AL593856.1-201ENST00000419949 805 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 FTH1P5-201ENST00000425761 545 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 GAPDHP34-201ENST00000432112 823 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 LDHAP2-201ENST00000437325 985 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 KF459542.1-201ENST00000450908 553 ntBASIC7.53□□□□□ -1.2
NPAS3Q8IXF0 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms