Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DNM1P47-203ENST00000571780 12667 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 RSL24D1P6-201ENST00000426934 401 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 REG1CP-206ENST00000447469 496 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC009127.1-201ENST00000467090 155 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 RN7SL423P-201ENST00000486202 304 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AP001267.4-201ENST00000602598 545 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC108738.1-201ENST00000603703 237 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AL359757.1-201ENST00000623176 255 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC091046.3-201ENST00000631455 1574 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 RPL7P11-201ENST00000437586 658 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 TXNP2-201ENST00000443918 295 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 OR11I1P-201ENST00000486033 954 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC013356.1-201ENST00000489027 564 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC109464.1-201ENST00000511091 819 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 GCSHP4-201ENST00000538792 439 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC005341.1-201ENST00000571086 708 ntBASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC88AQ3V6T2 CR1-205ENST00000367053 7469 ntTSL 5 BASIC6.46□□□□□ -1.37
CCDC88AQ3V6T2 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC88AQ3V6T2 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC88AQ3V6T2 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.46□□□□□ -1.37
CCDC88AQ3V6T2 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 RNA5SP332-201ENST00000391063 115 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 AC093414.1-201ENST00000434712 514 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 TXNP5-201ENST00000441043 315 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 KNOP1P3-201ENST00000446933 426 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 SNORA70.11-201ENST00000515987 138 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 SNORA70.13-201ENST00000516116 138 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 RNA5SP116-201ENST00000516132 98 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 OR4A43P-201ENST00000532938 908 ntBASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC88AQ3V6T2 AC005831.1-201ENST00000624384 1697 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AL009179.1-201ENST00000406085 265 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 RPL5P25-201ENST00000441148 775 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 COX6B1P5-201ENST00000509843 249 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 SCARNA9-201ENST00000530422 353 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC011487.3-201ENST00000593607 453 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 MTCO1P1-201ENST00000624263 1081 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC069542.2-201ENST00000624816 216 ntBASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms