Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 IMPA1P1-201ENST00000510718 842 ntBASIC4.79□□□□□ -1.64
FOXF1Q12946 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXF1Q12946 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXF1Q12946 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXF1Q12946 AL359219.2-201ENST00000555184 348 ntBASIC4.79□□□□□ -1.64
FOXF1Q12946 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXF1Q12946 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXF1Q12946 MIR4660-201ENST00000583549 74 ntBASIC4.79□□□□□ -1.64
FOXF1Q12946 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 AC069307.1-201ENST00000602820 447 ntBASIC4.79□□□□□ -1.64
FOXF1Q12946 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.79□□□□□ -1.64
FOXF1Q12946 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.79□□□□□ -1.64
FOXF1Q12946 MTCO1P1-201ENST00000624263 1081 ntBASIC4.79□□□□□ -1.64
FOXF1Q12946 AL355480.1-201ENST00000629041 99 ntBASIC4.79□□□□□ -1.64
FOXF1Q12946 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXF1Q12946 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXF1Q12946 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
FOXF1Q12946 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
FOXF1Q12946 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXF1Q12946 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXF1Q12946 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
FOXF1Q12946 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXF1Q12946 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC003985.2-201ENST00000562268 1669 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC005294.1-201ENST00000355509 281 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 U3.2-201ENST00000362981 210 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 RN7SKP153-201ENST00000365026 316 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXF1Q12946 MIR589-201ENST00000385238 99 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC079809.1-201ENST00000415468 276 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXF1Q12946 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXF1Q12946 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC011411.1-201ENST00000509592 876 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXF1Q12946 LSM3P2-201ENST00000551246 273 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC127381.1-201ENST00000555979 939 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.78□□□□□ -1.64
FOXF1Q12946 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXF1Q12946 RN7SL753P-201ENST00000581238 290 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXF1Q12946 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
FOXF1Q12946 AC011493.1-201ENST00000596753 1632 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC4.78□□□□□ -1.64
FOXF1Q12946 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
FOXF1Q12946 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.65
FOXF1Q12946 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.77□□□□□ -1.65
FOXF1Q12946 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXF1Q12946 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.77□□□□□ -1.65
FOXF1Q12946 AC092747.4-201ENST00000620519 1861 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXF1Q12946 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
FOXF1Q12946 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
FOXF1Q12946 MIR1286-201ENST00000408112 78 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AP000534.2-201ENST00000412729 568 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXF1Q12946 AL136231.1-201ENST00000429407 730 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 CLUHP1-201ENST00000435012 1190 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXF1Q12946 NOP56P2-201ENST00000447491 769 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 FAR2P1-206ENST00000449736 709 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AL606490.1-201ENST00000452266 765 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 RPL15P21-201ENST00000495592 567 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AC024558.1-201ENST00000505008 528 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AC022360.1-201ENST00000521058 340 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AC092709.1-201ENST00000521355 1045 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXF1Q12946 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXF1Q12946 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
FOXF1Q12946 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXF1Q12946 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXF1Q12946 RN7SL708P-201ENST00000580952 299 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
FOXF1Q12946 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
FOXF1Q12946 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.77□□□□□ -1.65
FOXF1Q12946 AC008814.1-201ENST00000603797 406 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AC009597.2-201ENST00000604659 592 ntBASIC4.77□□□□□ -1.65
FOXF1Q12946 AC011626.1-201ENST00000604710 562 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms