Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.14□□□□□ -1.59
SOX3P41225 AL136231.1-201ENST00000429407 730 ntBASIC5.14□□□□□ -1.59
SOX3P41225 OR6D1P-201ENST00000436165 939 ntBASIC5.14□□□□□ -1.59
SOX3P41225 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.14□□□□□ -1.59
SOX3P41225 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 TAAR4P-201ENST00000454843 1039 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC100832.1-201ENST00000471945 383 ntBASIC5.14□□□□□ -1.59
SOX3P41225 SIAH1P1-201ENST00000479411 923 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC093827.1-201ENST00000480094 861 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 SNORA70.17-201ENST00000516449 133 ntBASIC5.14□□□□□ -1.59
SOX3P41225 SCARNA21.2-201ENST00000516600 166 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AP002981.1-201ENST00000517692 975 ntBASIC5.14□□□□□ -1.59
SOX3P41225 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.14□□□□□ -1.59
SOX3P41225 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.14□□□□□ -1.59
SOX3P41225 OR4A17P-201ENST00000526032 904 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC137627.1-201ENST00000545761 289 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.14□□□□□ -1.59
SOX3P41225 HMGN2P47-201ENST00000559378 272 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC007225.2-201ENST00000562529 256 ntBASIC5.14□□□□□ -1.59
SOX3P41225 OOSP1P2-201ENST00000579644 351 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.14□□□□□ -1.59
SOX3P41225 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 AC012616.1-201ENST00000600294 197 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 AC005520.3-201ENST00000602874 370 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AP000864.1-201ENST00000609424 650 ntBASIC5.14□□□□□ -1.59
SOX3P41225 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 AC003001.2-201ENST00000616294 831 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC132068.1-201ENST00000623805 459 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AL139254.3-201ENST00000641097 674 ntBASIC5.14□□□□□ -1.59
SOX3P41225 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 AL929601.4-201ENST00000613011 1341 ntBASIC5.14□□□□□ -1.59
SOX3P41225 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 AL078595.2-201ENST00000605309 1780 ntBASIC5.14□□□□□ -1.59
SOX3P41225 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.13□□□□□ -1.59
SOX3P41225 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.13□□□□□ -1.59
SOX3P41225 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.13□□□□□ -1.59
SOX3P41225 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 CDY11P-201ENST00000447168 1651 ntBASIC5.13□□□□□ -1.59
SOX3P41225 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SOX3P41225 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.13□□□□□ -1.59
SOX3P41225 RNA5SP319-201ENST00000362768 119 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RNA5SP234-201ENST00000363916 119 ntBASIC5.13□□□□□ -1.59
SOX3P41225 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.13□□□□□ -1.59
SOX3P41225 AC005042.1-201ENST00000393397 800 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 AL009179.1-201ENST00000406085 265 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RN7SKP59-201ENST00000410520 314 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RPL12P43-201ENST00000420608 499 ntBASIC5.13□□□□□ -1.59
SOX3P41225 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.13□□□□□ -1.59
SOX3P41225 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.13□□□□□ -1.59
SOX3P41225 TPRKBP1-201ENST00000456243 481 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RN7SL51P-201ENST00000468230 285 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RN7SL547P-201ENST00000490793 290 ntBASIC5.13□□□□□ -1.59
SOX3P41225 AC108693.1-201ENST00000496068 432 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RPS17P5-201ENST00000498293 408 ntBASIC5.13□□□□□ -1.59
SOX3P41225 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.13□□□□□ -1.59
SOX3P41225 SEPT10P1-201ENST00000517342 1162 ntBASIC5.13□□□□□ -1.59
SOX3P41225 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.13□□□□□ -1.59
SOX3P41225 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.13□□□□□ -1.59
SOX3P41225 PMS2P3-207ENST00000529061 717 ntBASIC5.13□□□□□ -1.59
SOX3P41225 AP003168.1-201ENST00000530091 307 ntBASIC5.13□□□□□ -1.59
SOX3P41225 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.13□□□□□ -1.59
SOX3P41225 MTND2P17-201ENST00000550281 688 ntBASIC5.13□□□□□ -1.59
SOX3P41225 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 MIR4489-201ENST00000578869 62 ntBASIC5.13□□□□□ -1.59
SOX3P41225 MIR3176-201ENST00000582210 90 ntBASIC5.13□□□□□ -1.59
SOX3P41225 MIR4660-201ENST00000583549 74 ntBASIC5.13□□□□□ -1.59
SOX3P41225 KATNBL1P1-201ENST00000605192 748 ntBASIC5.13□□□□□ -1.59
SOX3P41225 AC007204.2-201ENST00000615022 616 ntBASIC5.13□□□□□ -1.59
SOX3P41225 AL118522.2-201ENST00000616045 615 ntBASIC5.13□□□□□ -1.59
SOX3P41225 MIR6826-201ENST00000617808 98 ntBASIC5.13□□□□□ -1.59
SOX3P41225 AC006213.5-201ENST00000619673 288 ntBASIC5.13□□□□□ -1.59
SOX3P41225 MIR8080-201ENST00000622224 89 ntBASIC5.13□□□□□ -1.59
SOX3P41225 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.13□□□□□ -1.59
SOX3P41225 AC022417.1-201ENST00000624768 1303 ntBASIC5.13□□□□□ -1.59
SOX3P41225 LINC01963-201ENST00000562038 3148 ntBASIC5.13□□□□□ -1.59
SOX3P41225 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SOX3P41225 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms