Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
CUX1P39880 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC8.59□□□□□ -1.03
CUX1P39880 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC8.59□□□□□ -1.03
CUX1P39880 CHIAP3-201ENST00000423668 1133 ntBASIC8.59□□□□□ -1.03
CUX1P39880 RPS29P9-201ENST00000440360 171 ntBASIC8.59□□□□□ -1.03
CUX1P39880 RPS23P7-201ENST00000466210 444 ntBASIC8.59□□□□□ -1.03
CUX1P39880 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC8.59□□□□□ -1.03
CUX1P39880 EIF1P5-201ENST00000585002 234 ntBASIC8.59□□□□□ -1.03
CUX1P39880 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 AC019193.2-201ENST00000610012 634 ntBASIC8.59□□□□□ -1.03
CUX1P39880 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC8.59□□□□□ -1.03
CUX1P39880 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC8.59□□□□□ -1.03
CUX1P39880 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC8.59□□□□□ -1.04
CUX1P39880 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC8.58□□□□□ -1.04
CUX1P39880 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC8.58□□□□□ -1.04
CUX1P39880 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC8.58□□□□□ -1.04
CUX1P39880 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC8.58□□□□□ -1.04
CUX1P39880 AC012512.1-201ENST00000446594 718 ntBASIC8.58□□□□□ -1.04
CUX1P39880 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC8.58□□□□□ -1.04
CUX1P39880 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC8.58□□□□□ -1.04
CUX1P39880 IGBP1P5-201ENST00000507524 1000 ntBASIC8.58□□□□□ -1.04
CUX1P39880 AC111000.3-201ENST00000508057 576 ntBASIC8.58□□□□□ -1.04
CUX1P39880 OR5M2P-201ENST00000529003 936 ntBASIC8.58□□□□□ -1.04
CUX1P39880 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC8.58□□□□□ -1.04
CUX1P39880 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC8.58□□□□□ -1.04
CUX1P39880 AC091932.2-201ENST00000623014 291 ntBASIC8.58□□□□□ -1.04
CUX1P39880 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
CUX1P39880 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC8.58□□□□□ -1.04
CUX1P39880 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC8.57□□□□□ -1.04
CUX1P39880 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC8.57□□□□□ -1.04
CUX1P39880 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
CUX1P39880 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
CUX1P39880 OR8V1P-201ENST00000395193 873 ntBASIC8.57□□□□□ -1.04
CUX1P39880 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC8.57□□□□□ -1.04
CUX1P39880 RSL24D1P6-201ENST00000426934 401 ntBASIC8.57□□□□□ -1.04
CUX1P39880 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC8.57□□□□□ -1.04
CUX1P39880 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
CUX1P39880 TAAR4P-201ENST00000454843 1039 ntBASIC8.57□□□□□ -1.04
CUX1P39880 NDUFAF4P3-201ENST00000456468 525 ntBASIC8.57□□□□□ -1.04
CUX1P39880 HMGN1P9-201ENST00000515212 298 ntBASIC8.57□□□□□ -1.04
CUX1P39880 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC8.57□□□□□ -1.04
CUX1P39880 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC8.57□□□□□ -1.04
CUX1P39880 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC8.57□□□□□ -1.04
CUX1P39880 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC8.57□□□□□ -1.04
CUX1P39880 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC8.57□□□□□ -1.04
CUX1P39880 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC8.57□□□□□ -1.04
CUX1P39880 AL034374.2-201ENST00000605281 548 ntBASIC8.57□□□□□ -1.04
CUX1P39880 AL356608.1-201ENST00000610034 820 ntBASIC8.57□□□□□ -1.04
CUX1P39880 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
CUX1P39880 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC8.57□□□□□ -1.04
CUX1P39880 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
CUX1P39880 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.57□□□□□ -1.04
CUX1P39880 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC8.57□□□□□ -1.04
CUX1P39880 AC009779.8-201ENST00000641684 4384 ntBASIC8.56□□□□□ -1.04
CUX1P39880 DCN-218ENST00000551354 2924 ntTSL 3 BASIC8.56□□□□□ -1.04
CUX1P39880 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
CUX1P39880 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 AF186996.5-201ENST00000418098 904 ntBASIC8.56□□□□□ -1.04
CUX1P39880 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC8.56□□□□□ -1.04
CUX1P39880 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 AL161722.2-201ENST00000434731 981 ntBASIC8.56□□□□□ -1.04
CUX1P39880 NDUFB4P8-201ENST00000435351 367 ntBASIC8.56□□□□□ -1.04
CUX1P39880 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 AL161747.1-201ENST00000480068 358 ntBASIC8.56□□□□□ -1.04
CUX1P39880 AC068587.1-201ENST00000483613 781 ntBASIC8.56□□□□□ -1.04
CUX1P39880 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC8.56□□□□□ -1.04
CUX1P39880 FCF1-203ENST00000553615 954 ntTSL 3 BASIC8.56□□□□□ -1.04
CUX1P39880 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC8.56□□□□□ -1.04
CUX1P39880 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC8.56□□□□□ -1.04
CUX1P39880 BNIP3P35-201ENST00000604530 490 ntBASIC8.56□□□□□ -1.04
CUX1P39880 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC8.56□□□□□ -1.04
CUX1P39880 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC8.56□□□□□ -1.04
CUX1P39880 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
CUX1P39880 STK3-216ENST00000523601 3107 ntTSL 2 BASIC8.56□□□□□ -1.04
CUX1P39880 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC8.55□□□□□ -1.04
CUX1P39880 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
CUX1P39880 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC8.55□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms