Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
USF1P22415 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.7□□□□□ -1.66
USF1P22415 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USF1P22415 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USF1P22415 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.7□□□□□ -1.66
USF1P22415 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
USF1P22415 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.7□□□□□ -1.66
USF1P22415 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.7□□□□□ -1.66
USF1P22415 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.7□□□□□ -1.66
USF1P22415 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
USF1P22415 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 ADAM24P-201ENST00000398655 2101 ntBASIC4.69□□□□□ -1.66
USF1P22415 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.69□□□□□ -1.66
USF1P22415 AC114774.1-201ENST00000507410 1770 ntBASIC4.69□□□□□ -1.66
USF1P22415 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 AC002524.1-201ENST00000411687 547 ntBASIC4.69□□□□□ -1.66
USF1P22415 RPL23AP27-201ENST00000415161 451 ntBASIC4.69□□□□□ -1.66
USF1P22415 AL133325.1-201ENST00000421090 382 ntBASIC4.69□□□□□ -1.66
USF1P22415 AC244033.1-201ENST00000426826 870 ntBASIC4.69□□□□□ -1.66
USF1P22415 BX276092.6-201ENST00000430476 250 ntBASIC4.69□□□□□ -1.66
USF1P22415 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.69□□□□□ -1.66
USF1P22415 AC006335.2-201ENST00000437993 330 ntBASIC4.69□□□□□ -1.66
USF1P22415 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC4.69□□□□□ -1.66
USF1P22415 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.69□□□□□ -1.66
USF1P22415 AC073072.2-201ENST00000447425 348 ntBASIC4.69□□□□□ -1.66
USF1P22415 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.69□□□□□ -1.66
USF1P22415 AL645937.3-201ENST00000453647 936 ntBASIC4.69□□□□□ -1.66
USF1P22415 BX276092.8-201ENST00000455722 250 ntBASIC4.69□□□□□ -1.66
USF1P22415 AC093270.2-201ENST00000486157 792 ntBASIC4.69□□□□□ -1.66
USF1P22415 RPS21P4-201ENST00000487122 248 ntBASIC4.69□□□□□ -1.66
USF1P22415 RN7SL447P-201ENST00000494711 245 ntBASIC4.69□□□□□ -1.66
USF1P22415 AC231760.1-201ENST00000498002 260 ntBASIC4.69□□□□□ -1.66
USF1P22415 AC111000.6-201ENST00000514471 709 ntBASIC4.69□□□□□ -1.66
USF1P22415 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.69□□□□□ -1.66
USF1P22415 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.69□□□□□ -1.66
USF1P22415 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.69□□□□□ -1.66
USF1P22415 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.69□□□□□ -1.66
USF1P22415 AC012616.1-201ENST00000600294 197 ntBASIC4.69□□□□□ -1.66
USF1P22415 WBP1LP8-201ENST00000617401 327 ntBASIC4.69□□□□□ -1.66
USF1P22415 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.69□□□□□ -1.66
USF1P22415 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
USF1P22415 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 CPS1-IT1-201ENST00000628368 2306 ntBASIC4.69□□□□□ -1.66
USF1P22415 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
USF1P22415 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
USF1P22415 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USF1P22415 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
USF1P22415 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 AC093591.2-201ENST00000565254 3843 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC018809.2-201ENST00000602436 3823 ntBASIC4.68□□□□□ -1.66
USF1P22415 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 AC007938.2-201ENST00000604666 2634 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC011503.2-201ENST00000594230 1500 ntBASIC4.68□□□□□ -1.66
USF1P22415 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.68□□□□□ -1.66
USF1P22415 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 AC005294.1-201ENST00000355509 281 ntBASIC4.68□□□□□ -1.66
USF1P22415 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
USF1P22415 U3.10-201ENST00000364459 214 ntBASIC4.68□□□□□ -1.66
USF1P22415 RN7SKP6-201ENST00000364795 319 ntBASIC4.68□□□□□ -1.66
USF1P22415 RNU1-77P-201ENST00000390868 162 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC005042.1-201ENST00000393397 800 ntBASIC4.68□□□□□ -1.66
USF1P22415 AL645927.1-201ENST00000396783 406 ntBASIC4.68□□□□□ -1.66
USF1P22415 RN7SKP213-201ENST00000410746 298 ntBASIC4.68□□□□□ -1.66
USF1P22415 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.68□□□□□ -1.66
USF1P22415 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.68□□□□□ -1.66
USF1P22415 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 MTND6P5-201ENST00000448266 512 ntBASIC4.68□□□□□ -1.66
USF1P22415 AURKAPS1-201ENST00000451805 1212 ntBASIC4.68□□□□□ -1.66
USF1P22415 RPL12P39-201ENST00000455456 496 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC004129.2-201ENST00000457229 287 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC072052.1-201ENST00000496556 306 ntBASIC4.68□□□□□ -1.66
USF1P22415 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 NDUFA5P12-201ENST00000503796 343 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.68□□□□□ -1.66
USF1P22415 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
USF1P22415 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms