Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 AP002530.1-201ENST00000405705 684 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A1P20908 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.08□□□□□ -1.6
COL5A1P20908 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A1P20908 AC023271.1-201ENST00000445936 1090 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AC239367.2-201ENST00000447309 705 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AC079168.1-201ENST00000458741 345 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A1P20908 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A1P20908 COX6B1P5-201ENST00000509843 249 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.08□□□□□ -1.6
COL5A1P20908 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 AC130364.2-201ENST00000528639 604 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 OR4A43P-201ENST00000532938 908 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.08□□□□□ -1.6
COL5A1P20908 MIR4737-201ENST00000583979 81 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AC104687.2-201ENST00000604442 342 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AL162431.4-201ENST00000604674 411 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AP005432.2-201ENST00000608162 586 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.08□□□□□ -1.6
COL5A1P20908 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.08□□□□□ -1.6
COL5A1P20908 AL669831.5-218ENST00000591702 1873 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.08□□□□□ -1.6
COL5A1P20908 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.08□□□□□ -1.6
COL5A1P20908 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
COL5A1P20908 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.08□□□□□ -1.6
COL5A1P20908 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.08□□□□□ -1.6
COL5A1P20908 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
COL5A1P20908 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC138907.8-201ENST00000623981 2256 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL5A1P20908 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 HSPA8P15-201ENST00000401676 786 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 MIR1182-201ENST00000408363 97 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.07□□□□□ -1.6
COL5A1P20908 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC073264.2-201ENST00000448886 166 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 RBMY2TP-201ENST00000451162 947 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 NDUFA12P1-201ENST00000455914 406 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 RPL7AP28-201ENST00000464513 571 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC140172.1-201ENST00000502928 141 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 RNA5SP116-201ENST00000516132 98 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 OR5AN2P-201ENST00000534535 896 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC011487.3-201ENST00000593607 453 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.07□□□□□ -1.6
COL5A1P20908 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.07□□□□□ -1.6
COL5A1P20908 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 LCOR-201ENST00000286067 4542 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL5A1P20908 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 RPL32P3-201ENST00000359025 275 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 RNU6-398P-201ENST00000384143 109 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.07□□□□□ -1.6
COL5A1P20908 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 AC234781.3-201ENST00000452540 973 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 RPL23AP72-201ENST00000492447 435 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 SCARNA20.4-201ENST00000516969 131 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.07□□□□□ -1.6
COL5A1P20908 IGKV1-32-201ENST00000519290 311 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.07□□□□□ -1.6
COL5A1P20908 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 UBE2FP2-201ENST00000566646 462 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AP000919.1-201ENST00000582850 985 ntBASIC5.07□□□□□ -1.6
COL5A1P20908 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.07□□□□□ -1.6
COL5A1P20908 AL031320.1-201ENST00000604177 357 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms