Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 U1.34-201ENST00000618578 162 ntBASIC9.1□□□□□ -0.95
CUX2O14529 U1.31-201ENST00000620022 160 ntBASIC9.1□□□□□ -0.95
CUX2O14529 AC021106.3-201ENST00000623925 531 ntBASIC9.1□□□□□ -0.95
CUX2O14529 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX2O14529 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC9.1□□□□□ -0.95
CUX2O14529 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC9.1□□□□□ -0.95
CUX2O14529 CCT8P1-201ENST00000413611 1657 ntBASIC9.1□□□□□ -0.95
CUX2O14529 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC9.1□□□□□ -0.95
CUX2O14529 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX2O14529 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX2O14529 RBPJP2-201ENST00000618187 1444 ntBASIC9.1□□□□□ -0.95
CUX2O14529 LRRC37A16P-202ENST00000586022 3725 ntBASIC9.1□□□□□ -0.95
CUX2O14529 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
CUX2O14529 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC9.09□□□□□ -0.95
CUX2O14529 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
CUX2O14529 RNA5SP387-201ENST00000364226 106 ntBASIC9.09□□□□□ -0.95
CUX2O14529 RNA5-8SP5-201ENST00000365304 152 ntBASIC9.09□□□□□ -0.95
CUX2O14529 MIR129-1-201ENST00000384972 72 ntBASIC9.09□□□□□ -0.95
CUX2O14529 RPS17P17-201ENST00000419392 409 ntBASIC9.09□□□□□ -0.95
CUX2O14529 CENPIP1-201ENST00000425713 902 ntBASIC9.09□□□□□ -0.95
CUX2O14529 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC9.09□□□□□ -0.95
CUX2O14529 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC9.09□□□□□ -0.95
CUX2O14529 AC109327.1-201ENST00000471666 403 ntBASIC9.09□□□□□ -0.95
CUX2O14529 AC079080.1-201ENST00000479841 822 ntBASIC9.09□□□□□ -0.95
CUX2O14529 AC090058.1-201ENST00000498788 435 ntBASIC9.09□□□□□ -0.95
CUX2O14529 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC9.09□□□□□ -0.95
CUX2O14529 AC025674.1-201ENST00000507074 324 ntBASIC9.09□□□□□ -0.95
CUX2O14529 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC9.09□□□□□ -0.95
CUX2O14529 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC9.09□□□□□ -0.95
CUX2O14529 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC9.09□□□□□ -0.95
CUX2O14529 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC9.09□□□□□ -0.95
CUX2O14529 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC9.09□□□□□ -0.95
CUX2O14529 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 AC016251.2-201ENST00000623393 3089 ntBASIC9.09□□□□□ -0.95
CUX2O14529 ALB-214ENST00000509063 1911 ntTSL 5 BASIC9.09□□□□□ -0.95
CUX2O14529 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
CUX2O14529 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX2O14529 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC9.09□□□□□ -0.95
CUX2O14529 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
CUX2O14529 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC9.09□□□□□ -0.95
CUX2O14529 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC9.08□□□□□ -0.96
CUX2O14529 SLC25A51P1-201ENST00000468432 871 ntBASIC9.08□□□□□ -0.96
CUX2O14529 AC010618.1-201ENST00000469924 477 ntBASIC9.08□□□□□ -0.96
CUX2O14529 HMGN2P25-201ENST00000486956 268 ntBASIC9.08□□□□□ -0.96
CUX2O14529 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC9.08□□□□□ -0.96
CUX2O14529 NPM1P6-201ENST00000521088 871 ntBASIC9.08□□□□□ -0.96
CUX2O14529 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC9.08□□□□□ -0.96
CUX2O14529 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC9.08□□□□□ -0.96
CUX2O14529 AL163952.1-202ENST00000569625 600 ntBASIC9.08□□□□□ -0.96
CUX2O14529 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC9.08□□□□□ -0.96
CUX2O14529 NANOGP3-201ENST00000605855 286 ntBASIC9.08□□□□□ -0.96
CUX2O14529 MTCO1P15-201ENST00000529569 1526 ntBASIC9.08□□□□□ -0.96
CUX2O14529 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 MT-RNR2-201ENST00000387347 1559 ntBASIC9.08□□□□□ -0.96
CUX2O14529 AC100757.1-201ENST00000616872 1835 ntBASIC9.08□□□□□ -0.96
CUX2O14529 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC9.08□□□□□ -0.96
CUX2O14529 EEF1A1P36-201ENST00000427807 1351 ntBASIC9.08□□□□□ -0.96
CUX2O14529 BX284613.1-201ENST00000452221 1641 ntBASIC9.08□□□□□ -0.96
CUX2O14529 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
CUX2O14529 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC9.08□□□□□ -0.96
CUX2O14529 OR4K15-201ENST00000305051 1216 ntBASIC9.08□□□□□ -0.96
CUX2O14529 AC017079.1-201ENST00000333650 415 ntBASIC9.08□□□□□ -0.96
CUX2O14529 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC9.08□□□□□ -0.96
CUX2O14529 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC9.08□□□□□ -0.96
CUX2O14529 OR52A4P-201ENST00000472867 958 ntBASIC9.08□□□□□ -0.96
CUX2O14529 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX2O14529 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC9.08□□□□□ -0.96
CUX2O14529 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
CUX2O14529 ATP5A1P1-201ENST00000454088 1321 ntBASIC9.07□□□□□ -0.96
CUX2O14529 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC9.07□□□□□ -0.96
CUX2O14529 AL449283.1-201ENST00000602631 3403 ntBASIC9.07□□□□□ -0.96
CUX2O14529 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC9.07□□□□□ -0.96
CUX2O14529 ZNF840P-201ENST00000504759 1996 ntBASIC9.07□□□□□ -0.96
CUX2O14529 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX2O14529 RPL23AP1-201ENST00000428990 471 ntBASIC9.07□□□□□ -0.96
CUX2O14529 NANOGP9-201ENST00000439890 892 ntBASIC9.07□□□□□ -0.96
CUX2O14529 AL358232.1-201ENST00000448030 501 ntBASIC9.07□□□□□ -0.96
CUX2O14529 MEMO1P4-201ENST00000453590 386 ntBASIC9.07□□□□□ -0.96
CUX2O14529 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC9.07□□□□□ -0.96
CUX2O14529 PMS2P3-207ENST00000529061 717 ntBASIC9.07□□□□□ -0.96
CUX2O14529 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC9.07□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms