Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RNA5SP46-201ENST00000362370 120 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AL031985.1-201ENST00000392713 418 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 MTND4P15-201ENST00000437913 1033 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 Z84478.1-201ENST00000438230 1219 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC064862.4-201ENST00000442180 334 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 CYCSP51-201ENST00000443545 318 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 EEF1B2P6-201ENST00000445713 673 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC112191.2-201ENST00000522428 333 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 MTND2P13-201ENST00000577438 1039 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 MIR3614-201ENST00000581261 86 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AC127024.6-201ENST00000621598 424 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 AP002371.2-201ENST00000624450 503 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 LINC01963-201ENST00000562038 3148 ntBASIC5.68□□□□□ -1.5
PCDH9Q9HC56 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 YES1P1-201ENST00000418510 1628 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC114786.1-201ENST00000512892 1415 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 Z83820.1-201ENST00000456978 1499 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 TMSB4XP4-201ENST00000323496 618 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 OR6K3-202ENST00000368146 996 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 RNA5SP187-201ENST00000384400 119 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 OR1F12-201ENST00000402365 945 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 SDHDP6-201ENST00000414693 480 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 HYALP1-201ENST00000417674 1279 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 RPL12P11-201ENST00000439970 501 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AL450996.1-201ENST00000445574 1202 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 HMGN1P36-201ENST00000446623 298 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 C1DP3-201ENST00000455013 423 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AL356390.1-201ENST00000455684 397 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 PPIAP19-201ENST00000486414 492 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 ATG10-AS1-201ENST00000504846 648 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 RN7SKP5-201ENST00000517045 272 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC027026.1-201ENST00000532323 742 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 RN7SL290P-201ENST00000578661 300 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC108738.1-201ENST00000603703 237 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC097063.1-201ENST00000426714 1797 ntBASIC5.67□□□□□ -1.5
PCDH9Q9HC56 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDH9Q9HC56 AC002525.1-201ENST00000624392 1622 ntBASIC5.66□□□□□ -1.5
PCDH9Q9HC56 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
PCDH9Q9HC56 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms