Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC005042.1-201ENST00000393397 800 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 RNGTTP1-201ENST00000420965 728 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 TMEM183AP1-205ENST00000432739 290 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 Z85994.2-201ENST00000434327 452 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AURKAPS1-201ENST00000451805 1212 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC012123.2-201ENST00000485809 248 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 RPS21P4-201ENST00000487122 248 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 NDUFA5P12-201ENST00000503796 343 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 GOLGA5P1-201ENST00000507317 980 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 PGAM1P13-201ENST00000507497 754 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 NPM1P52-201ENST00000518264 846 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 MTND2P7-201ENST00000521337 640 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AP006245.2-201ENST00000522004 300 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AGGF1P7-201ENST00000562369 913 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 LSM1P2-201ENST00000604911 322 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AL031658.2-201ENST00000616850 651 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 PWAR1-201ENST00000624188 2414 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 MIR551A-201ENST00000385042 96 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 USP24P1-201ENST00000433802 779 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 OR6D1P-201ENST00000436165 939 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 BTBD7P2-201ENST00000441962 620 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 NDUFA5P8-201ENST00000449019 346 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 RPL12P39-201ENST00000455456 496 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 RN7SL826P-201ENST00000479724 288 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC093827.1-201ENST00000480094 861 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 RPS7P6-201ENST00000485777 579 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 COX6B1P2-201ENST00000489624 230 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 RPL15P21-201ENST00000495592 567 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC072052.1-201ENST00000496556 306 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC022387.2-201ENST00000604050 448 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AL021368.1-201ENST00000607490 540 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC000068.2-201ENST00000608816 460 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AL121612.2-201ENST00000612261 482 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AL031595.2-201ENST00000624215 19071 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 AC011933.2-201ENST00000578539 2790 ntBASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC3Q9BQI4 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AL158152.1-201ENST00000602652 1435 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 RN7SKP6-201ENST00000364795 319 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AL589994.1-201ENST00000404962 340 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms