Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 RPS27AP19-201ENST00000597285 458 ntBASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 AL355472.4-201ENST00000610233 626 ntBASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 AC091905.1-201ENST00000624400 311 ntBASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 AL445231.1-201ENST00000445523 1814 ntTSL 2 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 AC106882.1-201ENST00000515789 2371 ntTSL 2 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 HKR1-203ENST00000541583 2758 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 TBC1D5-209ENST00000429383 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC7.56□□□□□ -1.2
NPAS3Q8IXF0 AC090132.1-201ENST00000524071 1480 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RPL12P38-202ENST00000588627 2319 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RNU6-1331P-201ENST00000363658 106 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 MIR99A-201ENST00000384906 81 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 IGHV4-59-201ENST00000390629 495 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 Y_RNA.579-201ENST00000390939 94 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RNA5SP53-201ENST00000391299 120 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RNU2-18P-201ENST00000411224 162 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 Z82198.3-201ENST00000421145 199 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 Z83313.1-201ENST00000433780 718 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 PIP5K1P2-201ENST00000437005 1120 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RPL7L1P11-201ENST00000446092 721 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC022080.2-201ENST00000452932 533 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RPL31P11-202ENST00000454082 372 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 SNORD42A-201ENST00000459584 64 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC010655.3-201ENST00000478818 450 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 ATP1B1P1-201ENST00000509767 915 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 RNU6-789P-201ENST00000517105 102 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 HSPA8P13-201ENST00000523715 472 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 OR8A2P-201ENST00000528631 952 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 GLYATL1P4-201ENST00000529326 906 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 OR4C2P-201ENST00000530855 1064 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 CCDC60-204ENST00000539847 581 ntAPPRIS ALT2 TSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AL139286.1-201ENST00000604465 483 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC091925.1-201ENST00000623204 462 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC087894.3-201ENST00000623682 349 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC000367.1-201ENST00000452711 1766 ntBASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 CASP14-201ENST00000427043 3241 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
NPAS3Q8IXF0 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 AC138627.1-203ENST00000641872 1680 ntBASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
NPAS3Q8IXF0 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms