Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC025263.3-201ENST00000622965 1396 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 RNA5SP350-201ENST00000363298 111 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 RNU4-24P-201ENST00000364565 139 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 RNU6-906P-201ENST00000384700 70 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 RPL5P19-201ENST00000404228 893 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 Y_RNA.619-201ENST00000410951 90 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 RMRPP5-201ENST00000411156 267 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC245060.4-201ENST00000413293 1121 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 SDHDP6-201ENST00000414693 480 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 RPL35AP31-201ENST00000418340 337 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC6.24□□□□□ -1.41
USP39Q53GS9 VN1R25P-201ENST00000443385 738 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 TRIM60P16-201ENST00000444048 694 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 RPL7P33-201ENST00000444159 742 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 OR6C72P-201ENST00000451403 892 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AL445665.1-202ENST00000452436 324 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 USP9YP25-201ENST00000457708 443 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 RNU7-157P-201ENST00000459600 66 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC112184.1-201ENST00000505179 312 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC010625.1-201ENST00000511296 403 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 TMEM97P2-201ENST00000517841 403 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC091163.3-201ENST00000518269 1144 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC112191.2-201ENST00000522428 333 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 IGHV1-14-201ENST00000523391 241 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AP003717.3-201ENST00000544832 1180 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 MTCYBP23-201ENST00000558717 1102 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AGGF1P9-201ENST00000561884 913 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC007225.2-201ENST00000562529 256 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 DEFB131E-202ENST00000602581 683 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 RPL12P48-201ENST00000605620 304 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC107952.2-201ENST00000606048 486 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC092354.2-201ENST00000607786 514 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 MIR6793-201ENST00000612376 63 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
USP39Q53GS9 AC011455.2-201ENST00000599320 3336 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AC105235.1-201ENST00000623208 1816 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 AL133243.2-201ENST00000610331 1621 ntBASIC6.24□□□□□ -1.41
USP39Q53GS9 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.24□□□□□ -1.41
USP39Q53GS9 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.24□□□□□ -1.41
USP39Q53GS9 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
USP39Q53GS9 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
USP39Q53GS9 CR382285.2-201ENST00000624662 1495 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 RBMY1HP-201ENST00000382759 1389 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.23□□□□□ -1.41
USP39Q53GS9 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USP39Q53GS9 RNU1-49P-201ENST00000363468 159 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 RNU6-192P-201ENST00000391253 100 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
USP39Q53GS9 Y_RNA.604-201ENST00000410574 102 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 RN7SKP286-201ENST00000410894 299 ntBASIC6.23□□□□□ -1.41
USP39Q53GS9 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms