Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 SNORA2.3-201ENST00000383920 135 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 SNORA70.9-201ENST00000384370 135 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 AL590399.2-201ENST00000427536 309 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.73□□□□□ -1.33
COL18A1P39060 AL356390.1-201ENST00000455684 397 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 AC020937.1-201ENST00000519677 1013 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.73□□□□□ -1.33
COL18A1P39060 AL034374.2-201ENST00000605281 548 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 AC019193.2-201ENST00000610012 634 ntBASIC6.73□□□□□ -1.33
COL18A1P39060 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL18A1P39060 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.73□□□□□ -1.33
COL18A1P39060 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 AL451142.1-201ENST00000375867 775 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.72□□□□□ -1.33
COL18A1P39060 OR52A4P-201ENST00000472867 958 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.72□□□□□ -1.33
COL18A1P39060 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.72□□□□□ -1.33
COL18A1P39060 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 AC091932.2-201ENST00000623014 291 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.72□□□□□ -1.33
COL18A1P39060 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
COL18A1P39060 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL18A1P39060 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.72□□□□□ -1.33
COL18A1P39060 MAPK10-270ENST00000641102 3538 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL18A1P39060 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.72□□□□□ -1.33
COL18A1P39060 RPL32P3-201ENST00000359025 275 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.72□□□□□ -1.33
COL18A1P39060 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.72□□□□□ -1.33
COL18A1P39060 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.72□□□□□ -1.33
COL18A1P39060 IGBP1P4-201ENST00000503202 879 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 IGBP1P5-201ENST00000507524 1000 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 EIF1P5-201ENST00000585002 234 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 MIR6839-201ENST00000620425 113 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL18A1P39060 AL355488.2-201ENST00000609909 2850 ntBASIC6.72□□□□□ -1.33
COL18A1P39060 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.72□□□□□ -1.33
COL18A1P39060 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL18A1P39060 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL18A1P39060 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.71□□□□□ -1.33
COL18A1P39060 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.71□□□□□ -1.33
COL18A1P39060 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL18A1P39060 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC6.71□□□□□ -1.33
COL18A1P39060 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.34
COL18A1P39060 AL031123.3-201ENST00000623345 1837 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 AP003175.1-201ENST00000641383 6658 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
COL18A1P39060 RPS3AP23-201ENST00000401762 784 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 BX510359.2-201ENST00000417920 305 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 AC234781.3-201ENST00000452540 973 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.71□□□□□ -1.34
COL18A1P39060 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.71□□□□□ -1.34
COL18A1P39060 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.71□□□□□ -1.34
COL18A1P39060 AP001521.2-201ENST00000608772 546 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 AC012414.7-202ENST00000622705 1090 ntBASIC6.71□□□□□ -1.34
COL18A1P39060 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
COL18A1P39060 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.71□□□□□ -1.34
COL18A1P39060 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.71□□□□□ -1.34
COL18A1P39060 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL18A1P39060 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.7□□□□□ -1.34
COL18A1P39060 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
COL18A1P39060 MIR589-201ENST00000385238 99 ntBASIC6.7□□□□□ -1.34
COL18A1P39060 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL18A1P39060 NDUFB4P8-201ENST00000435351 367 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 179.3 ms