Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
HLA-DMBP28068 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HLA-DMBP28068 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
HLA-DMBP28068 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HLA-DMBP28068 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
HLA-DMBP28068 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
HLA-DMBP28068 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HLA-DMBP28068 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.15□□□□□ -1.75
HLA-DMBP28068 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.15□□□□□ -1.75
HLA-DMBP28068 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HLA-DMBP28068 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 OR13C1P-202ENST00000641378 2919 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 RNA5SP131-201ENST00000365452 119 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC093155.2-201ENST00000420734 937 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 SUMO2P3-201ENST00000438311 288 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 SEPT7P3-201ENST00000455017 621 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC023141.9-201ENST00000458734 412 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 AL136038.1-201ENST00000497246 351 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 USP9YP2-201ENST00000504503 1000 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 USP9YP1-201ENST00000513521 1002 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 SCARNA21.2-201ENST00000516600 166 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 IGBP1P1-201ENST00000554337 1009 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 OR11H3P-201ENST00000554547 982 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC020978.7-201ENST00000575953 1187 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 RN7SL290P-201ENST00000578661 300 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AP000894.4-201ENST00000610185 483 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 MIR6768-201ENST00000610734 72 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC026367.3-201ENST00000619032 590 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC135068.5-201ENST00000624197 983 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC073869.8-201ENST00000641806 335 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DMBP28068 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
HLA-DMBP28068 AC104260.2-201ENST00000623551 3497 ntBASIC4.14□□□□□ -1.75
HLA-DMBP28068 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC114786.1-201ENST00000512892 1415 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 SMG1P4-204ENST00000523028 4131 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 SAMMSON-213ENST00000641336 1521 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 RNA5SP46-201ENST00000362370 120 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 SNORA16A-201ENST00000384342 137 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 TRAV35-201ENST00000390462 330 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 RN7SKP229-201ENST00000410465 302 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 RN7SKP293-201ENST00000411389 296 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC079355.1-201ENST00000421770 223 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC002504.1-201ENST00000438281 691 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 TCEA1P3-201ENST00000443005 880 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 VDAC2P4-201ENST00000452925 711 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 RPS27AP2-201ENST00000457576 465 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 RNU6-615P-201ENST00000516065 106 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 SCARNA20.4-201ENST00000516969 131 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 SNORA43.3-201ENST00000517240 103 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms