Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.1□□□□□ -1.59
COL5A1P20908 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.1□□□□□ -1.59
COL5A1P20908 IRF5P1-201ENST00000504852 2164 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.1□□□□□ -1.59
COL5A1P20908 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.1□□□□□ -1.59
COL5A1P20908 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL5A1P20908 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL5A1P20908 RNU11-201ENST00000387069 134 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
COL5A1P20908 GAPDHP15-201ENST00000398586 975 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 RN7SKP27-201ENST00000410684 333 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 MGAT2P2-201ENST00000427194 797 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 RPS4XP16-201ENST00000427198 791 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 PRPF38AP2-201ENST00000438179 851 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.1□□□□□ -1.59
COL5A1P20908 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.1□□□□□ -1.59
COL5A1P20908 AC104634.1-201ENST00000452720 462 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 AL513533.1-201ENST00000453728 415 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.1□□□□□ -1.59
COL5A1P20908 MIR4270-201ENST00000581799 70 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 MIR4420-201ENST00000583944 77 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 SS18L2P2-201ENST00000583960 235 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL5A1P20908 AL360012.1-201ENST00000602813 131 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.1□□□□□ -1.59
COL5A1P20908 MTCO1P1-201ENST00000624263 1081 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.1□□□□□ -1.59
COL5A1P20908 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.1□□□□□ -1.59
COL5A1P20908 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.1□□□□□ -1.59
COL5A1P20908 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL5A1P20908 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 AC012213.2-201ENST00000562917 4597 ntBASIC5.1□□□□□ -1.59
COL5A1P20908 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 NLRP3P1-201ENST00000622303 1785 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
COL5A1P20908 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.09□□□□□ -1.59
COL5A1P20908 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.09□□□□□ -1.59
COL5A1P20908 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.09□□□□□ -1.59
COL5A1P20908 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 RN7SKP17-201ENST00000411242 351 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 AC099670.2-201ENST00000435130 321 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.09□□□□□ -1.59
COL5A1P20908 RPL34P20-201ENST00000442771 351 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.09□□□□□ -1.59
COL5A1P20908 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.09□□□□□ -1.59
COL5A1P20908 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.09□□□□□ -1.59
COL5A1P20908 AC136777.2-201ENST00000522979 358 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.09□□□□□ -1.59
COL5A1P20908 AC005000.1-201ENST00000536192 288 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.09□□□□□ -1.59
COL5A1P20908 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.09□□□□□ -1.59
COL5A1P20908 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.09□□□□□ -1.59
COL5A1P20908 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL5A1P20908 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.09□□□□□ -1.59
COL5A1P20908 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.09□□□□□ -1.59
COL5A1P20908 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL5A1P20908 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.09□□□□□ -1.59
COL5A1P20908 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL5A1P20908 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
COL5A1P20908 SNORA62-201ENST00000365493 153 ntBASIC5.09□□□□□ -1.6
COL5A1P20908 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.09□□□□□ -1.6
COL5A1P20908 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.09□□□□□ -1.6
COL5A1P20908 AC007064.3-201ENST00000422608 359 ntBASIC5.09□□□□□ -1.6
COL5A1P20908 AL590399.4-201ENST00000436561 601 ntBASIC5.09□□□□□ -1.6
COL5A1P20908 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
COL5A1P20908 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.09□□□□□ -1.6
COL5A1P20908 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.09□□□□□ -1.6
COL5A1P20908 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL5A1P20908 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.09□□□□□ -1.6
COL5A1P20908 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL5A1P20908 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL5A1P20908 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL5A1P20908 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.08□□□□□ -1.6
COL5A1P20908 AL353796.1-201ENST00000561542 3241 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL5A1P20908 MIPEPP2-201ENST00000422560 1819 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 AC100757.1-201ENST00000616872 1835 ntBASIC5.08□□□□□ -1.6
COL5A1P20908 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.08□□□□□ -1.6
COL5A1P20908 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms