Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 HMGB1P23-201ENST00000518743 568 ntBASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 OR7E128P-201ENST00000532736 1024 ntBASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 TVP23CP2-201ENST00000571473 623 ntBASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 ATM-215ENST00000530958 5718 ntTSL 2 BASIC3.55□□□□□ -1.84
ALMS1Q8TCU4 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 U3.22-201ENST00000391120 215 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 RSU1P3-201ENST00000412878 835 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 RPEP3-201ENST00000425462 676 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 RPS17P2-201ENST00000461663 408 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AL353729.2-201ENST00000605859 1249 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 EEF1A1P33-201ENST00000554413 1362 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 U3.30-201ENST00000391308 210 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 VN1R21P-201ENST00000426703 765 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC091180.1-201ENST00000462104 372 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC058823.1-201ENST00000485315 474 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC011487.3-201ENST00000593607 453 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC139713.2-214ENST00000642059 1811 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 SNORD56.6-201ENST00000384569 71 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 RNU4-25P-201ENST00000410569 230 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 HSPD1P12-201ENST00000429127 1069 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 AC023141.6-201ENST00000429418 337 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 GAPDHP56-201ENST00000506031 988 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 BNIP3P33-201ENST00000598912 569 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 CCT8P1-201ENST00000413611 1657 ntBASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC3.54□□□□□ -1.84
ALMS1Q8TCU4 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 MED28P3-201ENST00000444288 531 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 DHX40P1-201ENST00000588725 1412 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 ASNSP1-204ENST00000641977 1664 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 SNORA57.1-201ENST00000391227 145 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 CYP2AC1P-201ENST00000407830 1173 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 AC119751.6-201ENST00000416712 186 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 CDC27P1-201ENST00000445384 715 ntBASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC3.53□□□□□ -1.84
ALMS1Q8TCU4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 157.7 ms