Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MIR4277-201ENST00000578298 84 ntBASIC6.32□□□□□ -1.4
SCN4AP35499 AC098935.2-201ENST00000604222 466 ntBASIC6.32□□□□□ -1.4
SCN4AP35499 AC068724.3-201ENST00000625906 87 ntBASIC6.32□□□□□ -1.4
SCN4AP35499 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.32□□□□□ -1.4
SCN4AP35499 AC034229.2-201ENST00000566945 2508 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.31□□□□□ -1.4
SCN4AP35499 AL353796.1-201ENST00000561542 3241 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SCN4AP35499 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.31□□□□□ -1.4
SCN4AP35499 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SCN4AP35499 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.31□□□□□ -1.4
SCN4AP35499 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.31□□□□□ -1.4
SCN4AP35499 RPS3AP23-201ENST00000401762 784 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 RNF10P1-201ENST00000418589 369 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SCN4AP35499 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.31□□□□□ -1.4
SCN4AP35499 IGBP1P3-201ENST00000447449 1000 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 AC128716.1-201ENST00000475129 166 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.31□□□□□ -1.4
SCN4AP35499 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.31□□□□□ -1.4
SCN4AP35499 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.31□□□□□ -1.4
SCN4AP35499 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.31□□□□□ -1.4
SCN4AP35499 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
SCN4AP35499 AL020997.2-201ENST00000602607 184 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.31□□□□□ -1.4
SCN4AP35499 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
SCN4AP35499 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SCN4AP35499 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SCN4AP35499 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.31□□□□□ -1.4
SCN4AP35499 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SCN4AP35499 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
SCN4AP35499 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
SCN4AP35499 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 MIR600-201ENST00000385007 98 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 SNORA57.1-201ENST00000391227 145 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 CHIAP3-201ENST00000423668 1133 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AC004975.1-201ENST00000428733 208 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 AC093414.1-201ENST00000434712 514 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.3□□□□□ -1.4
SCN4AP35499 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 AC006967.1-201ENST00000467608 589 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 AC109464.1-201ENST00000511091 819 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 GTF2IP11-201ENST00000526931 420 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 MIR3160-1-201ENST00000577972 85 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.3□□□□□ -1.4
SCN4AP35499 AC092653.1-201ENST00000608509 531 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AL138960.1-201ENST00000613838 513 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AC099654.6-201ENST00000636487 512 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 MAPK10-270ENST00000641102 3538 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 AL355834.1-201ENST00000556602 3965 ntBASIC6.3□□□□□ -1.4
SCN4AP35499 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.3□□□□□ -1.4
SCN4AP35499 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.3□□□□□ -1.4
SCN4AP35499 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SCN4AP35499 DHX40P1-201ENST00000588725 1412 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 AL359265.2-201ENST00000434367 631 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 RPL36AP15-201ENST00000444514 266 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 RPL10P17-201ENST00000453852 316 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SCN4AP35499 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 RN7SKP260-201ENST00000516907 149 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.29□□□□□ -1.4
SCN4AP35499 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.29□□□□□ -1.4
SCN4AP35499 AC091932.2-201ENST00000623014 291 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 AC140479.2-201ENST00000421567 3130 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 AL132640.2-201ENST00000559968 1698 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms