Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC7.03□□□□□ -1.28
MSX1P28360 AC027124.1-201ENST00000440852 466 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AL353803.3-201ENST00000444641 335 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AL590365.1-201ENST00000450788 243 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AC010307.1-201ENST00000467206 836 ntBASIC7.03□□□□□ -1.28
MSX1P28360 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC7.03□□□□□ -1.28
MSX1P28360 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 AC018475.1-201ENST00000478358 465 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AC106760.2-201ENST00000504159 619 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC7.03□□□□□ -1.28
MSX1P28360 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 NR1I3-233ENST00000515452 1093 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 SNORA19.2-201ENST00000516013 114 ntBASIC7.03□□□□□ -1.28
MSX1P28360 RNA5SP216-201ENST00000516111 123 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC7.03□□□□□ -1.28
MSX1P28360 AC008676.1-202ENST00000520658 545 ntTSL 4 BASIC7.03□□□□□ -1.28
MSX1P28360 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 AC243972.3-201ENST00000539655 198 ntBASIC7.03□□□□□ -1.28
MSX1P28360 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC7.03□□□□□ -1.28
MSX1P28360 AC092757.2-201ENST00000559026 633 ntTSL 4 BASIC7.03□□□□□ -1.28
MSX1P28360 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 H3F3BP2-201ENST00000583907 357 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AC022916.3-201ENST00000592961 742 ntBASIC7.03□□□□□ -1.28
MSX1P28360 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
MSX1P28360 AC233702.2-201ENST00000618784 583 ntTSL 4 BASIC7.03□□□□□ -1.28
MSX1P28360 AL713922.2-201ENST00000619384 716 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AP003068.4-201ENST00000623192 802 ntBASIC7.03□□□□□ -1.28
MSX1P28360 HBG1-202ENST00000632727 369 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 MIR1302-1-201ENST00000637932 143 ntBASIC7.03□□□□□ -1.28
MSX1P28360 MKKS-204ENST00000639674 192 ntBASIC7.03□□□□□ -1.28
MSX1P28360 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC7.03□□□□□ -1.28
MSX1P28360 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 OR7E11P-202ENST00000642027 1491 ntBASIC7.03□□□□□ -1.28
MSX1P28360 ATP8A2P2-201ENST00000437678 1568 ntBASIC7.03□□□□□ -1.28
MSX1P28360 EXOC6-201ENST00000260762 3564 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
MSX1P28360 EVI2A-203ENST00000462804 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.28
MSX1P28360 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 CSNK2A3-201ENST00000528848 1416 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
MSX1P28360 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
MSX1P28360 WDR89-204ENST00000620954 2935 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
MSX1P28360 ZNF680-201ENST00000309683 3022 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC7.02□□□□□ -1.29
MSX1P28360 MTND5P3-201ENST00000438536 1800 ntBASIC7.02□□□□□ -1.29
MSX1P28360 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 RPL10P16-201ENST00000325000 645 ntBASIC7.02□□□□□ -1.29
MSX1P28360 RNU6-1066P-201ENST00000363573 105 ntBASIC7.02□□□□□ -1.29
MSX1P28360 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 Y_RNA.422-201ENST00000384054 114 ntBASIC7.02□□□□□ -1.29
MSX1P28360 RPSAP72-201ENST00000407020 358 ntBASIC7.02□□□□□ -1.29
MSX1P28360 SNORA11C-201ENST00000408532 129 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AL031584.2-201ENST00000420585 767 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC7.02□□□□□ -1.29
MSX1P28360 AC062016.2-201ENST00000420950 676 ntBASIC7.02□□□□□ -1.29
MSX1P28360 RPSAP62-201ENST00000432596 833 ntBASIC7.02□□□□□ -1.29
MSX1P28360 ATP5LP4-201ENST00000434169 307 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC123904.1-201ENST00000441072 368 ntBASIC7.02□□□□□ -1.29
MSX1P28360 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 NPM1P39-201ENST00000449818 867 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC092570.2-201ENST00000452117 1143 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC007000.1-201ENST00000453064 794 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 C1DP4-201ENST00000455429 424 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 AC135721.2-201ENST00000464237 300 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC007849.1-201ENST00000469794 513 ntTSL 4 BASIC7.02□□□□□ -1.29
MSX1P28360 AC093278.1-201ENST00000494700 600 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC079768.1-201ENST00000503181 711 ntBASIC7.02□□□□□ -1.29
MSX1P28360 PSMA2P2-201ENST00000504319 686 ntBASIC7.02□□□□□ -1.29
MSX1P28360 SRP72-202ENST00000504757 745 ntTSL 2 BASIC7.02□□□□□ -1.29
MSX1P28360 AC139783.2-201ENST00000504847 1145 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 BRD9P1-201ENST00000529855 560 ntBASIC7.02□□□□□ -1.29
MSX1P28360 NXPE2P1-201ENST00000543705 726 ntBASIC7.02□□□□□ -1.29
MSX1P28360 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
MSX1P28360 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC7.02□□□□□ -1.29
MSX1P28360 AC007861.1-201ENST00000576671 674 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.02□□□□□ -1.29
MSX1P28360 AC011840.5-201ENST00000582125 771 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC243960.4-201ENST00000600532 288 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC011373.1-201ENST00000607270 237 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC090948.2-201ENST00000607363 564 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC103710.4-201ENST00000609301 899 ntBASIC7.02□□□□□ -1.29
MSX1P28360 AC105429.2-201ENST00000610567 517 ntBASIC7.02□□□□□ -1.29
MSX1P28360 MILR1-202ENST00000612535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms