Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.78□□□□□ -1.32
COL6A1P12109 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 AL356317.1-201ENST00000396110 1436 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 SNORD116-8-201ENST00000384365 95 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 RNA5SP105-201ENST00000391123 113 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 RPL7P58-201ENST00000402913 758 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 MRM2-202ENST00000407040 582 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 RPL36P18-201ENST00000419316 318 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 REREP1Y-201ENST00000422655 198 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC010099.3-201ENST00000423896 409 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC092447.2-201ENST00000435487 669 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC073143.1-201ENST00000436316 395 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 REREP2Y-201ENST00000439103 200 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 XKRY2-201ENST00000442362 1093 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 GAPDHP23-201ENST00000444823 993 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AL096829.2-201ENST00000446582 742 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC092685.1-201ENST00000447960 1243 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 RPL31P20-201ENST00000449593 360 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 OTX2P1-201ENST00000450956 354 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 LRRC37A14P-201ENST00000452297 462 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC105918.1-201ENST00000474399 838 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC092824.1-201ENST00000483524 576 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 RN7SL184P-201ENST00000488308 297 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AK4P6-201ENST00000505168 528 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC006499.3-201ENST00000506077 748 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 RNU6-491P-201ENST00000516099 110 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 AP003033.1-201ENST00000527244 415 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 AL358913.1-201ENST00000554342 121 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC027281.1-201ENST00000574178 758 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC015802.2-201ENST00000589690 189 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC012254.3-201ENST00000591183 2117 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC097467.4-201ENST00000605504 141 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 RNU4-5P-201ENST00000607255 135 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AL451049.1-201ENST00000608672 497 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC116651.1-201ENST00000609724 556 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC096861.1-201ENST00000616652 240 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AL512427.1-201ENST00000618593 349 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 AC015722.2-201ENST00000622210 551 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 CCL14-204ENST00000622526 472 ntTSL 3 BASIC6.78□□□□□ -1.32
COL6A1P12109 CASC19-222ENST00000641321 1173 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 SAMMSON-227ENST00000642114 1199 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 GTF2IP4-201ENST00000453092 2054 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC105235.1-201ENST00000623208 1816 ntBASIC6.78□□□□□ -1.32
COL6A1P12109 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
COL6A1P12109 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL6A1P12109 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.78□□□□□ -1.32
COL6A1P12109 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.32
COL6A1P12109 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
COL6A1P12109 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.77□□□□□ -1.33
COL6A1P12109 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 AC010132.2-201ENST00000295493 1043 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 RNA5SP394-201ENST00000364216 119 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 RNU6-729P-201ENST00000384399 107 ntBASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms