Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 SCARNA16.4-201ENST00000516956 187 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC009597.2-201ENST00000604659 592 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 GNG5P2-201ENST00000372054 207 ntBASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 CRIP1P1-201ENST00000427567 185 ntBASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 AC068287.1-201ENST00000430283 295 ntBASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 MTCYBP21-201ENST00000443300 1113 ntBASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 AC068870.1-201ENST00000563737 2455 ntBASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
CCDC88AQ3V6T2 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 THAP12P4-201ENST00000528321 2266 ntBASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC096921.1-201ENST00000411661 375 ntBASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 PRPF38AP2-201ENST00000438179 851 ntBASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 RPL7AP28-201ENST00000464513 571 ntBASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AP001804.1-201ENST00000526868 919 ntBASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AL359715.3-201ENST00000569267 2123 ntBASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC88AQ3V6T2 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC073072.2-201ENST00000447425 348 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AL596266.1-201ENST00000448132 400 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 snoU13.29-201ENST00000459370 104 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC015712.7-201ENST00000615211 635 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC010480.1-201ENST00000624823 684 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC006600.2-201ENST00000624834 2506 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AL078621.3-201ENST00000623707 2042 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC079741.1-201ENST00000321498 212 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 RNU1-146P-201ENST00000364015 165 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 MIR105-1-201ENST00000385222 81 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 DNAJC19P7-201ENST00000428811 344 ntBASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC88AQ3V6T2 MIR4277-201ENST00000578298 84 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms