Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 IMPA1P1-201ENST00000510718 842 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 IGKV2-4-201ENST00000523070 340 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 OR7E10P-201ENST00000526420 991 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 OR8Q1P-201ENST00000526467 655 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC019322.1-201ENST00000571869 389 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC124856.1-201ENST00000600819 896 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 BMS1P7-201ENST00000602440 1052 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AC034236.3-201ENST00000605999 461 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AC129915.3-201ENST00000634128 948 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 OR8G3P-202ENST00000641572 1255 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AC104964.3-201ENST00000606115 2860 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
HNF4AP41235 AL360270.2-201ENST00000562952 5985 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
HNF4AP41235 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 MRRFP1-201ENST00000435941 1675 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.53□□□□□ -1.52
HNF4AP41235 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
HNF4AP41235 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 RNA5SP500-201ENST00000364486 119 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 MIR130A-201ENST00000385274 89 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 MT-TP-201ENST00000387461 68 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HNF4AP41235 RNU6-564P-201ENST00000410983 104 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AL357752.1-201ENST00000412817 349 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AL158827.1-201ENST00000416300 391 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 NIFKP3-201ENST00000417799 865 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 RPS3P2-201ENST00000421346 701 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AL035660.1-201ENST00000422041 222 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 OR10T1P-201ENST00000424327 947 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.53□□□□□ -1.52
HNF4AP41235 MAPRE1P3-201ENST00000435438 796 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 AP006222.1-205ENST00000450734 457 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 CALM1P2-201ENST00000452941 448 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC007386.1-201ENST00000455212 582 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC094085.1-201ENST00000468914 584 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 RPS17P15-201ENST00000475609 349 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.53□□□□□ -1.52
HNF4AP41235 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 GAPDHP62-201ENST00000515313 990 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC5.53□□□□□ -1.52
HNF4AP41235 RNA5SP271-201ENST00000516700 88 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC139365.2-201ENST00000517972 253 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC022826.1-201ENST00000519383 805 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.53□□□□□ -1.52
HNF4AP41235 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC096996.1-201ENST00000563813 325 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 NDUFA5P11-201ENST00000567995 343 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC084373.1-201ENST00000603311 235 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.53□□□□□ -1.52
HNF4AP41235 AC015712.7-201ENST00000615211 635 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AC090607.5-201ENST00000615692 224 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AP003499.2-201ENST00000624100 483 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
HNF4AP41235 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 AC007342.9-201ENST00000623877 1385 ntBASIC5.53□□□□□ -1.52
HNF4AP41235 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HNF4AP41235 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.53□□□□□ -1.52
HNF4AP41235 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HNF4AP41235 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HNF4AP41235 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
HNF4AP41235 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.52□□□□□ -1.53
HNF4AP41235 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.52□□□□□ -1.53
HNF4AP41235 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HNF4AP41235 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.52□□□□□ -1.53
HNF4AP41235 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HNF4AP41235 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HNF4AP41235 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HNF4AP41235 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.52□□□□□ -1.53
HNF4AP41235 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.52□□□□□ -1.53
HNF4AP41235 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.52□□□□□ -1.53
HNF4AP41235 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.52□□□□□ -1.53
HNF4AP41235 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 187.7 ms