Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
CUX1P39880 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.02
CUX1P39880 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
CUX1P39880 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC8.71□□□□□ -1.02
CUX1P39880 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC8.71□□□□□ -1.02
CUX1P39880 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC8.71□□□□□ -1.02
CUX1P39880 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC8.71□□□□□ -1.02
CUX1P39880 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC8.71□□□□□ -1.02
CUX1P39880 AC079097.1-201ENST00000512187 1399 ntBASIC8.71□□□□□ -1.02
CUX1P39880 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC8.71□□□□□ -1.02
CUX1P39880 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
CUX1P39880 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
CUX1P39880 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 RNU1-74P-201ENST00000384108 171 ntBASIC8.7□□□□□ -1.02
CUX1P39880 P2RY10P2-201ENST00000416730 913 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AC073465.2-201ENST00000440938 498 ntBASIC8.7□□□□□ -1.02
CUX1P39880 OR7E125P-201ENST00000443450 846 ntBASIC8.7□□□□□ -1.02
CUX1P39880 RN7SL481P-201ENST00000477764 299 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC8.7□□□□□ -1.02
CUX1P39880 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC8.7□□□□□ -1.02
CUX1P39880 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC8.7□□□□□ -1.02
CUX1P39880 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC8.7□□□□□ -1.02
CUX1P39880 AC068831.8-201ENST00000620171 435 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AC135068.12-201ENST00000637370 931 ntBASIC8.7□□□□□ -1.02
CUX1P39880 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
CUX1P39880 GDA-209ENST00000545168 5362 ntTSL 2 BASIC8.7□□□□□ -1.02
CUX1P39880 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC8.7□□□□□ -1.02
CUX1P39880 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
CUX1P39880 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
CUX1P39880 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 AC010329.1-201ENST00000593903 8328 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
CUX1P39880 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
CUX1P39880 RPS29P10-201ENST00000439197 166 ntBASIC8.7□□□□□ -1.02
CUX1P39880 OR52J1P-201ENST00000450596 932 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC8.7□□□□□ -1.02
CUX1P39880 RNA5SP392-201ENST00000516905 112 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AC034205.1-201ENST00000520621 638 ntBASIC8.7□□□□□ -1.02
CUX1P39880 MORF4L1P3-201ENST00000525966 950 ntBASIC8.7□□□□□ -1.02
CUX1P39880 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC8.7□□□□□ -1.02
CUX1P39880 AC005377.1-201ENST00000605126 456 ntBASIC8.7□□□□□ -1.02
CUX1P39880 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
CUX1P39880 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
CUX1P39880 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC8.69□□□□□ -1.02
CUX1P39880 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC8.69□□□□□ -1.02
CUX1P39880 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
CUX1P39880 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
CUX1P39880 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
CUX1P39880 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
CUX1P39880 MAPK10-263ENST00000641052 4307 ntBASIC8.69□□□□□ -1.02
CUX1P39880 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC8.69□□□□□ -1.02
CUX1P39880 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC8.69□□□□□ -1.02
CUX1P39880 SNORA66-201ENST00000384792 133 ntBASIC8.69□□□□□ -1.02
CUX1P39880 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
CUX1P39880 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC8.69□□□□□ -1.02
CUX1P39880 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC8.69□□□□□ -1.02
CUX1P39880 RGS5-219ENST00000528019 512 ntTSL 4 BASIC8.69□□□□□ -1.02
CUX1P39880 AC008147.3-201ENST00000548666 354 ntBASIC8.69□□□□□ -1.02
CUX1P39880 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
CUX1P39880 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CUX1P39880 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CUX1P39880 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC8.68□□□□□ -1.02
CUX1P39880 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC8.68□□□□□ -1.02
CUX1P39880 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CUX1P39880 AC015799.1-201ENST00000622996 3122 ntBASIC8.68□□□□□ -1.02
CUX1P39880 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC8.68□□□□□ -1.02
CUX1P39880 GNG5P2-201ENST00000372054 207 ntBASIC8.68□□□□□ -1.02
CUX1P39880 COX6CP17-201ENST00000421389 185 ntBASIC8.68□□□□□ -1.02
CUX1P39880 IGHV5-78-201ENST00000450948 295 ntBASIC8.68□□□□□ -1.02
CUX1P39880 AC093827.1-201ENST00000480094 861 ntBASIC8.68□□□□□ -1.02
CUX1P39880 AC026979.1-201ENST00000492525 396 ntBASIC8.68□□□□□ -1.02
CUX1P39880 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC8.68□□□□□ -1.02
CUX1P39880 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC8.68□□□□□ -1.02
CUX1P39880 AL512782.1-201ENST00000603093 364 ntBASIC8.68□□□□□ -1.02
CUX1P39880 ALB-219ENST00000621085 1418 ntTSL 5 BASIC8.68□□□□□ -1.02
CUX1P39880 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.02
CUX1P39880 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CUX1P39880 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC8.67□□□□□ -1.02
CUX1P39880 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CUX1P39880 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC8.67□□□□□ -1.02
CUX1P39880 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
CUX1P39880 AL449283.1-201ENST00000602631 3403 ntBASIC8.67□□□□□ -1.02
CUX1P39880 SELE-204ENST00000367776 3576 ntTSL 5 BASIC8.67□□□□□ -1.02
CUX1P39880 SELE-205ENST00000367777 3576 ntTSL 5 BASIC8.67□□□□□ -1.02
CUX1P39880 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CUX1P39880 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CUX1P39880 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC8.67□□□□□ -1.02
CUX1P39880 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC8.67□□□□□ -1.02
CUX1P39880 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC8.67□□□□□ -1.02
CUX1P39880 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC8.67□□□□□ -1.02
CUX1P39880 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
CUX1P39880 AC015712.7-201ENST00000615211 635 ntBASIC8.67□□□□□ -1.02
CUX1P39880 LCOR-201ENST00000286067 4542 ntBASIC8.67□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms