Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.8□□□□□ -1.32
COL18A1P39060 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.79□□□□□ -1.32
COL18A1P39060 LCOR-201ENST00000286067 4542 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.79□□□□□ -1.32
COL18A1P39060 DHX40P1-201ENST00000588725 1412 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.79□□□□□ -1.32
COL18A1P39060 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.79□□□□□ -1.32
COL18A1P39060 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.79□□□□□ -1.32
COL18A1P39060 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.79□□□□□ -1.32
COL18A1P39060 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 TCEA1P1-201ENST00000449716 880 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 RPS23P7-201ENST00000466210 444 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 AC134698.5-201ENST00000519444 336 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 AC034205.1-201ENST00000520621 638 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.79□□□□□ -1.32
COL18A1P39060 AL356608.1-201ENST00000610034 820 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 AL117378.2-201ENST00000622916 1337 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 AC010928.1-201ENST00000592477 1447 ntBASIC6.79□□□□□ -1.32
COL18A1P39060 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL18A1P39060 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
COL18A1P39060 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL18A1P39060 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 OR9G4-201ENST00000302957 984 ntBASIC6.78□□□□□ -1.32
COL18A1P39060 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 RPL18P10-201ENST00000425606 538 ntBASIC6.78□□□□□ -1.32
COL18A1P39060 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
COL18A1P39060 HPRT1P1-201ENST00000509498 657 ntBASIC6.78□□□□□ -1.32
COL18A1P39060 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.78□□□□□ -1.32
COL18A1P39060 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.78□□□□□ -1.32
COL18A1P39060 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
COL18A1P39060 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.78□□□□□ -1.32
COL18A1P39060 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL18A1P39060 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.77□□□□□ -1.32
COL18A1P39060 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
COL18A1P39060 SAMMSON-226ENST00000642089 1582 ntBASIC6.77□□□□□ -1.32
COL18A1P39060 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 KYNUP3-201ENST00000574386 1341 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
COL18A1P39060 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
COL18A1P39060 AC093827.1-201ENST00000480094 861 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AC025674.1-201ENST00000507074 324 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 IMPA1P1-201ENST00000510718 842 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.77□□□□□ -1.33
COL18A1P39060 HMGN1P9-201ENST00000515212 298 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.77□□□□□ -1.33
COL18A1P39060 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.77□□□□□ -1.33
COL18A1P39060 AC019322.1-201ENST00000571869 389 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AL162431.4-201ENST00000604674 411 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 AL596275.2-208ENST00000641192 594 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.77□□□□□ -1.33
COL18A1P39060 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.77□□□□□ -1.33
COL18A1P39060 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.33
COL18A1P39060 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.77□□□□□ -1.33
COL18A1P39060 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.77□□□□□ -1.33
COL18A1P39060 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 CHIAP3-201ENST00000423668 1133 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 CNOT7P1-201ENST00000429006 852 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 BX679664.2-201ENST00000439282 283 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.77□□□□□ -1.33
COL18A1P39060 AC091153.1-201ENST00000466297 402 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AC006967.1-201ENST00000467608 589 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 SCARNA22-201ENST00000503991 125 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.77□□□□□ -1.33
COL18A1P39060 AC020910.3-201ENST00000603701 874 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 AL139124.1-201ENST00000609123 421 ntBASIC6.77□□□□□ -1.33
COL18A1P39060 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms