Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.36□□□□□ -1.39
BRCA1P38398 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.36□□□□□ -1.39
BRCA1P38398 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.36□□□□□ -1.39
BRCA1P38398 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 MORF4L1P3-201ENST00000525966 950 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.36□□□□□ -1.39
BRCA1P38398 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 AC068733.2-201ENST00000605434 1418 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
BRCA1P38398 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 OR4K15-201ENST00000305051 1216 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 RNU1-74P-201ENST00000384108 171 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 SNORA70F-201ENST00000384142 135 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 RPL12P17-201ENST00000432393 498 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.36□□□□□ -1.39
BRCA1P38398 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 RPL12P20-201ENST00000475538 479 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 GLUD1P3-202ENST00000508551 200 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 TVP23CP2-201ENST00000571473 623 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 AC092653.1-201ENST00000608509 531 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
BRCA1P38398 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
BRCA1P38398 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
BRCA1P38398 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BRCA1P38398 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
BRCA1P38398 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.35□□□□□ -1.39
BRCA1P38398 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 HSPA8P15-201ENST00000401676 786 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 AC073143.1-201ENST00000436316 395 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.35□□□□□ -1.39
BRCA1P38398 RPL10P17-201ENST00000453852 316 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 MRPS33P2-201ENST00000507850 322 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 AC006427.1-201ENST00000514359 712 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 SCARNA20.4-201ENST00000516969 131 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.35□□□□□ -1.39
BRCA1P38398 AC122688.1-201ENST00000541494 223 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.35□□□□□ -1.39
BRCA1P38398 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.35□□□□□ -1.39
BRCA1P38398 UG0898H09-202ENST00000623646 7040 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.35□□□□□ -1.39
BRCA1P38398 Z98755.1-201ENST00000407015 1384 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC6.35□□□□□ -1.39
BRCA1P38398 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
BRCA1P38398 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 AL592148.3-201ENST00000608771 2646 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 HYDIN2-203ENST00000614586 13885 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.35□□□□□ -1.39
BRCA1P38398 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.35□□□□□ -1.39
BRCA1P38398 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.35□□□□□ -1.39
BRCA1P38398 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 AC139713.2-214ENST00000642059 1811 ntBASIC6.35□□□□□ -1.39
BRCA1P38398 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
BRCA1P38398 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.34□□□□□ -1.39
BRCA1P38398 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.34□□□□□ -1.39
BRCA1P38398 AL365220.1-201ENST00000432923 399 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.34□□□□□ -1.39
BRCA1P38398 AL137845.2-201ENST00000444292 988 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AC011005.3-201ENST00000491624 395 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 RN7SL604P-201ENST00000492589 296 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.34□□□□□ -1.39
BRCA1P38398 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.34□□□□□ -1.39
BRCA1P38398 OR4A17P-201ENST00000526032 904 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 OR4A43P-201ENST00000532938 908 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.34□□□□□ -1.39
BRCA1P38398 RPL26P30-202ENST00000602923 645 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AC009237.13-201ENST00000603193 276 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AL445423.1-201ENST00000609941 536 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.34□□□□□ -1.39
BRCA1P38398 SAMM50P1-201ENST00000455403 1399 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.34□□□□□ -1.39
BRCA1P38398 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.34□□□□□ -1.39
BRCA1P38398 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms