Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 CHEK2P5-201ENST00000423877 246 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 RIMKLBP2-201ENST00000424737 654 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC092106.1-201ENST00000444291 373 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 RN7SL188P-201ENST00000469842 285 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 RPL5P22-201ENST00000480199 884 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 RN7SL273P-201ENST00000481561 299 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC069304.1-201ENST00000491593 704 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC023424.1-201ENST00000496058 459 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC021106.1-201ENST00000509020 1058 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC091912.1-201ENST00000511351 248 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 TMEM97P2-201ENST00000517841 403 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC130364.2-201ENST00000528639 604 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AL390334.1-201ENST00000556395 450 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AP005262.1-201ENST00000582646 997 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC008833.1-201ENST00000611633 691 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC025574.2-201ENST00000615621 514 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC087565.3-203ENST00000641018 837 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AC083843.2-201ENST00000568248 6253 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 Z95331.1-201ENST00000623075 23112 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HLA-DMBP28068 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.17□□□□□ -1.74
HLA-DMBP28068 AL450345.1-202ENST00000605741 3881 ntBASIC4.17□□□□□ -1.74
HLA-DMBP28068 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 OR5AQ1P-202ENST00000641257 1534 ntBASIC4.16□□□□□ -1.74
HLA-DMBP28068 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 SNORA51.1-201ENST00000363243 140 ntBASIC4.16□□□□□ -1.74
HLA-DMBP28068 U3.7-201ENST00000363668 216 ntBASIC4.16□□□□□ -1.74
HLA-DMBP28068 RNA5SP242-201ENST00000364171 118 ntBASIC4.16□□□□□ -1.74
HLA-DMBP28068 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HLA-DMBP28068 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.16□□□□□ -1.74
HLA-DMBP28068 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms