Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.51□□□□□ -1.37
COL5A3P25940 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 LRRC37A9P-201ENST00000603850 5376 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 GNG5P2-201ENST00000372054 207 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.5□□□□□ -1.37
COL5A3P25940 PRPF38AP2-201ENST00000438179 851 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 AC020898.1-201ENST00000474167 787 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.5□□□□□ -1.37
COL5A3P25940 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 BNIP3P35-201ENST00000604530 490 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 AL596275.2-208ENST00000641192 594 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL5A3P25940 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.5□□□□□ -1.37
COL5A3P25940 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.5□□□□□ -1.37
COL5A3P25940 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 OR9G4-201ENST00000302957 984 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 OR8V1P-201ENST00000395193 873 ntBASIC6.5□□□□□ -1.37
COL5A3P25940 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.5□□□□□ -1.37
COL5A3P25940 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.5□□□□□ -1.37
COL5A3P25940 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL5A3P25940 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.5□□□□□ -1.37
COL5A3P25940 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 DHX40P1-201ENST00000588725 1412 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 RN7SKP114-201ENST00000410327 279 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 RNU2-50P-201ENST00000410494 143 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 OR52J1P-201ENST00000450596 932 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 AC093827.1-201ENST00000480094 861 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 IMPA1P1-201ENST00000510718 842 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.49□□□□□ -1.37
COL5A3P25940 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.49□□□□□ -1.37
COL5A3P25940 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.49□□□□□ -1.37
COL5A3P25940 AC010928.1-201ENST00000592477 1447 ntBASIC6.49□□□□□ -1.37
COL5A3P25940 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL5A3P25940 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 RNA5SP191-201ENST00000362585 102 ntBASIC6.48□□□□□ -1.37
COL5A3P25940 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A3P25940 IGHV5-78-201ENST00000450948 295 ntBASIC6.48□□□□□ -1.37
COL5A3P25940 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A3P25940 AC026979.1-201ENST00000492525 396 ntBASIC6.48□□□□□ -1.37
COL5A3P25940 HMGN1P9-201ENST00000515212 298 ntBASIC6.48□□□□□ -1.37
COL5A3P25940 AC009704.2-201ENST00000618739 483 ntBASIC6.48□□□□□ -1.37
COL5A3P25940 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL5A3P25940 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.48□□□□□ -1.37
COL5A3P25940 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL5A3P25940 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 SAMMSON-226ENST00000642089 1582 ntBASIC6.48□□□□□ -1.37
COL5A3P25940 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.48□□□□□ -1.37
COL5A3P25940 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.48□□□□□ -1.37
COL5A3P25940 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
COL5A3P25940 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL5A3P25940 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.48□□□□□ -1.37
COL5A3P25940 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms