Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXD4P09016 AC044860.2-201ENST00000561005 179 ntBASIC5.14□□□□□ -1.59
HOXD4P09016 DPPA2P4-201ENST00000563717 878 ntBASIC5.14□□□□□ -1.59
HOXD4P09016 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXD4P09016 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.14□□□□□ -1.59
HOXD4P09016 AC004948.1-201ENST00000609858 672 ntBASIC5.14□□□□□ -1.59
HOXD4P09016 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.14□□□□□ -1.59
HOXD4P09016 AC073869.7-201ENST00000640874 297 ntBASIC5.14□□□□□ -1.59
HOXD4P09016 OR11H2-202ENST00000641517 1085 ntBASIC5.14□□□□□ -1.59
HOXD4P09016 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.14□□□□□ -1.59
HOXD4P09016 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.14□□□□□ -1.59
HOXD4P09016 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXD4P09016 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HOXD4P09016 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXD4P09016 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.14□□□□□ -1.59
HOXD4P09016 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HOXD4P09016 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HOXD4P09016 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXD4P09016 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXD4P09016 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 AL590763.1-201ENST00000398297 1545 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 AL159987.1-201ENST00000347911 293 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RNA5SP131-201ENST00000365452 119 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 MIR1286-201ENST00000408112 78 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RN7SKP59-201ENST00000410520 314 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RMRPP5-201ENST00000411156 267 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 OR6E1P-201ENST00000414424 923 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXD4P09016 VN1R21P-201ENST00000426703 765 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RPS27P18-201ENST00000431701 247 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 VN1R96P-201ENST00000446052 858 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AC007386.1-201ENST00000455212 582 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXD4P09016 RPS23P2-201ENST00000463671 415 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RPL5P16-201ENST00000471467 790 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 COPS8P2-201ENST00000473228 627 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RN7SL583P-201ENST00000475692 287 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RPS23P1-201ENST00000491662 432 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 OR5M14P-201ENST00000506803 618 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXD4P09016 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXD4P09016 RNU6-551P-201ENST00000516661 103 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXD4P09016 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.13□□□□□ -1.59
HOXD4P09016 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 AP005262.1-201ENST00000582646 997 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 IMMP1LP3-201ENST00000604197 224 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 AC007204.2-201ENST00000615022 616 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 MIR6837-201ENST00000620884 64 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 AC235565.1-201ENST00000456962 1325 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
HOXD4P09016 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 THAP12P5-201ENST00000405864 2275 ntBASIC5.13□□□□□ -1.59
HOXD4P09016 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXD4P09016 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXD4P09016 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXD4P09016 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HOXD4P09016 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXD4P09016 AL353796.1-201ENST00000561542 3241 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.12□□□□□ -1.59
HOXD4P09016 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXD4P09016 RNU4-2-201ENST00000365668 141 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 SNORA70-201ENST00000384436 135 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 NIFKP3-201ENST00000417799 865 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms