Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 HMGB1P44-201ENST00000508597 572 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 RNA5SP271-201ENST00000516700 88 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 TOMM20P1-201ENST00000534518 427 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 AC090888.3-201ENST00000558917 509 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 MIR193BHG-214ENST00000641765 509 ntBASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TRIM49D1C9J1S8 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AC100778.3-201ENST00000580060 1750 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 RN7SKP275-201ENST00000364626 301 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 RNU4-2-201ENST00000365668 141 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 OR7E156P-201ENST00000400303 464 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 FMO7P-201ENST00000436045 768 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 Z84478.1-201ENST00000438230 1219 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 CYCSP24-201ENST00000445119 316 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 EEF1B2P6-201ENST00000445713 673 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 DNAJB5P1-201ENST00000454004 806 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 RN7SL72P-201ENST00000460697 269 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 PFN1P8-201ENST00000497012 543 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 RN7SKP99-201ENST00000517028 307 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AC005341.1-201ENST00000571086 708 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AL162431.4-201ENST00000604674 411 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 MTCO1P1-201ENST00000624263 1081 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 AL731532.2-201ENST00000623542 1953 ntBASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM49D1C9J1S8 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC005294.1-201ENST00000355509 281 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 RNA5SP223-201ENST00000365174 120 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 CTSL3P-202ENST00000412179 788 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 MARK2P12-201ENST00000420129 585 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC002069.1-201ENST00000429649 1159 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 GAPDHP58-201ENST00000438477 1006 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC012512.1-201ENST00000446594 718 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 RN7SL423P-201ENST00000486202 304 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 USP9YP2-201ENST00000504503 1000 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC109481.1-201ENST00000509173 282 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 USP9YP1-201ENST00000513521 1002 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC078878.1-201ENST00000539832 958 ntBASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.28□□□□□ -1.56
TRIM49D1C9J1S8 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms