Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RPL7P56-201ENST00000429441 717 ntBASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 AC016712.1-201ENST00000431088 378 ntBASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 RN7SL459P-201ENST00000481078 302 ntBASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 AP000919.1-201ENST00000582850 985 ntBASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 MIR4737-201ENST00000583979 81 ntBASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 RN7SKP149-201ENST00000363008 344 ntBASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 DUBR-205ENST00000495228 411 ntTSL 2 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AC134698.5-201ENST00000519444 336 ntBASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AC087283.1-201ENST00000604029 1074 ntBASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
SHROOM4Q9ULL8 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 RANP7-201ENST00000418085 644 ntBASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 VN1R21P-201ENST00000426703 765 ntBASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 TEX41-205ENST00000431734 529 ntTSL 4 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 AL596266.1-201ENST00000448132 400 ntBASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 NDUFA5P9-201ENST00000472609 340 ntBASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 AC008897.1-201ENST00000494006 347 ntBASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
SHROOM4Q9ULL8 MT-RNR2-201ENST00000387347 1559 ntBASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 AL009179.1-201ENST00000406085 265 ntBASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 NANOGP9-201ENST00000439890 892 ntBASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 AC073072.2-201ENST00000447425 348 ntBASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 RN7SL481P-201ENST00000477764 299 ntBASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 IGKV1-32-201ENST00000519290 311 ntBASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC10.31□□□□□ -0.76
SHROOM4Q9ULL8 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AL121886.1-201ENST00000358609 435 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 RPL23AP17-201ENST00000401064 499 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AL121977.1-201ENST00000401636 979 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 RNU6ATAC21P-201ENST00000408656 126 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AL161722.1-201ENST00000446972 1032 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 HMGB1P44-201ENST00000508597 572 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AC004980.4-201ENST00000513375 203 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AC139426.3-201ENST00000605648 2059 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 TMEM183AP1-205ENST00000432739 290 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 GSTM5P1-201ENST00000434751 660 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 AC092905.1-201ENST00000467527 949 ntBASIC10.3□□□□□ -0.76
SHROOM4Q9ULL8 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC10.3□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms