Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC003989.1-201ENST00000434569 565 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC236972.4-201ENST00000458091 963 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AP002371.1-201ENST00000463604 433 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 CABYRP1-201ENST00000465493 1045 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC090589.1-201ENST00000473109 362 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC022415.1-202ENST00000486612 523 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 RPL5P14-201ENST00000494197 878 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC131392.1-201ENST00000506490 633 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 GOLGA5P1-201ENST00000507317 980 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AP000619.2-201ENST00000546014 969 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 RN7SL32P-201ENST00000580514 281 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC008759.1-201ENST00000589783 983 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AP001267.4-201ENST00000602598 545 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 RNU4-89P-201ENST00000607443 133 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC116165.3-201ENST00000614524 400 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC093875.1-201ENST00000623688 504 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AL132640.3-201ENST00000630473 177 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 AC073488.9-201ENST00000631601 754 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 YES1P1-201ENST00000418510 1628 ntBASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC39Q9UFE4 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 PPIAP24-201ENST00000328558 471 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 Y_RNA.6-201ENST00000362350 114 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC234772.1-201ENST00000377927 937 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 RNU11-6P-201ENST00000391127 133 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC026310.1-201ENST00000396004 378 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AL008987.1-201ENST00000415528 237 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 PTP4A1P5-201ENST00000420305 455 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 SPATA20P1-201ENST00000423089 438 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 HCG17-214ENST00000453558 732 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AKR1D1P1-201ENST00000457236 936 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 RPS3AP49-201ENST00000472161 790 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC020779.1-201ENST00000478757 796 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 RN7SL655P-201ENST00000486087 298 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 RPL19P11-201ENST00000495944 589 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 PGBD4P4-201ENST00000509673 613 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 MINOS1P4-201ENST00000515470 318 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 SCARNA5-201ENST00000516201 276 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 OR4A40P-201ENST00000533878 948 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC087481.2-201ENST00000565492 330 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 RPL7AP69-201ENST00000595306 806 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC078795.3-201ENST00000602913 472 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC012175.1-201ENST00000603755 531 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 SNORD96A-201ENST00000606577 79 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 SNORA35B-201ENST00000607417 129 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC126177.8-201ENST00000618339 1015 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 MRPL57P1-201ENST00000621486 265 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms