Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SOX2P48431 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.27□□□□□ -1.57
SOX2P48431 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 AL022311.1-201ENST00000623726 19416 ntBASIC5.26□□□□□ -1.57
SOX2P48431 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 AC011933.2-201ENST00000578539 2790 ntBASIC5.26□□□□□ -1.57
SOX2P48431 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 RNU6-906P-201ENST00000384700 70 ntBASIC5.26□□□□□ -1.57
SOX2P48431 RNY3P9-201ENST00000384727 106 ntBASIC5.26□□□□□ -1.57
SOX2P48431 MIR27A-201ENST00000385073 78 ntBASIC5.26□□□□□ -1.57
SOX2P48431 MTCO2P31-201ENST00000402702 684 ntBASIC5.26□□□□□ -1.57
SOX2P48431 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 RN7SKP166-201ENST00000410812 305 ntBASIC5.26□□□□□ -1.57
SOX2P48431 RNU4-74P-201ENST00000411280 161 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AL354868.1-201ENST00000417077 482 ntBASIC5.26□□□□□ -1.57
SOX2P48431 DPPA2P2-201ENST00000418220 897 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 AL512593.1-201ENST00000444758 779 ntBASIC5.26□□□□□ -1.57
SOX2P48431 POU5F1P5-201ENST00000445059 658 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SOX2P48431 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.26□□□□□ -1.57
SOX2P48431 HIGD1AP16-201ENST00000450986 258 ntBASIC5.26□□□□□ -1.57
SOX2P48431 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 EIF3LP2-201ENST00000457262 807 ntBASIC5.26□□□□□ -1.57
SOX2P48431 RN7SL83P-201ENST00000468131 297 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 MTND4LP2-201ENST00000502312 285 ntBASIC5.26□□□□□ -1.57
SOX2P48431 MTCYBP35-201ENST00000503630 1137 ntBASIC5.26□□□□□ -1.57
SOX2P48431 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 MTCYBP19-201ENST00000517463 1124 ntBASIC5.26□□□□□ -1.57
SOX2P48431 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 BCAS2P1-201ENST00000528022 632 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AC135983.3-201ENST00000528049 1226 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 AC005412.1-201ENST00000580812 1049 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 AC036176.3-201ENST00000602456 418 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AC113368.1-201ENST00000603736 382 ntBASIC5.26□□□□□ -1.57
SOX2P48431 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.26□□□□□ -1.57
SOX2P48431 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC5.26□□□□□ -1.57
SOX2P48431 AL035461.2-201ENST00000619201 524 ntBASIC5.26□□□□□ -1.57
SOX2P48431 RPL23AP61-201ENST00000623642 466 ntBASIC5.26□□□□□ -1.57
SOX2P48431 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 AC009039.2-201ENST00000624524 529 ntBASIC5.26□□□□□ -1.57
SOX2P48431 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
SOX2P48431 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 OR8G3P-202ENST00000641572 1255 ntBASIC5.26□□□□□ -1.57
SOX2P48431 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SOX2P48431 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 CASC19-246ENST00000641625 1606 ntBASIC5.26□□□□□ -1.57
SOX2P48431 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 AC116158.1-201ENST00000560231 2129 ntBASIC5.26□□□□□ -1.57
SOX2P48431 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SOX2P48431 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SOX2P48431 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.26□□□□□ -1.57
SOX2P48431 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX2P48431 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SOX2P48431 AC083837.1-201ENST00000565297 2994 ntBASIC5.25□□□□□ -1.57
SOX2P48431 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX2P48431 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SOX2P48431 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
SOX2P48431 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX2P48431 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SOX2P48431 THAP12P9-201ENST00000503971 2360 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms