Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
COL18A1P39060 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.82□□□□□ -1.32
COL18A1P39060 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 U3.10-201ENST00000364459 214 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 TXNP5-201ENST00000441043 315 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AL161722.1-201ENST00000446972 1032 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.82□□□□□ -1.32
COL18A1P39060 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.82□□□□□ -1.32
COL18A1P39060 RN7SL481P-201ENST00000477764 299 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AC010350.1-201ENST00000504908 231 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.82□□□□□ -1.32
COL18A1P39060 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 AC008147.3-201ENST00000548666 354 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.82□□□□□ -1.32
COL18A1P39060 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 AL512782.1-201ENST00000603093 364 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.82□□□□□ -1.32
COL18A1P39060 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL18A1P39060 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL18A1P39060 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL18A1P39060 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
COL18A1P39060 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL18A1P39060 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
COL18A1P39060 AC006210.2-201ENST00000367074 1545 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 AC004690.1-201ENST00000418216 328 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 AL137845.2-201ENST00000444292 988 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 IGHV5-78-201ENST00000450948 295 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 RN7SL354P-201ENST00000469282 294 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 AC020898.1-201ENST00000474167 787 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 AC068587.1-201ENST00000483613 781 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.81□□□□□ -1.32
COL18A1P39060 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.81□□□□□ -1.32
COL18A1P39060 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.81□□□□□ -1.32
COL18A1P39060 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL18A1P39060 AC069542.2-201ENST00000624816 216 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL18A1P39060 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.81□□□□□ -1.32
COL18A1P39060 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.81□□□□□ -1.32
COL18A1P39060 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
COL18A1P39060 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL18A1P39060 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC6.81□□□□□ -1.32
COL18A1P39060 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.8□□□□□ -1.32
COL18A1P39060 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 OR8V1P-201ENST00000395193 873 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 RPS27AP7-201ENST00000422792 455 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AC026979.1-201ENST00000492525 396 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AC093720.1-201ENST00000505681 714 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 NMNAT1P1-201ENST00000554095 876 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.8□□□□□ -1.32
COL18A1P39060 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL18A1P39060 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.8□□□□□ -1.32
COL18A1P39060 RNU2-50P-201ENST00000410494 143 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 PRPF38AP2-201ENST00000438179 851 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 TAAR4P-201ENST00000454843 1039 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AC005412.2-201ENST00000492004 341 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.8□□□□□ -1.32
COL18A1P39060 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.8□□□□□ -1.32
COL18A1P39060 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.8□□□□□ -1.32
COL18A1P39060 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.8□□□□□ -1.32
COL18A1P39060 AC011626.1-201ENST00000604710 562 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 AC135068.12-201ENST00000637370 931 ntBASIC6.8□□□□□ -1.32
COL18A1P39060 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms