Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXA9P31269 AL731532.1-201ENST00000623972 4236 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA9P31269 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA9P31269 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.71□□□□□ -1.49
HOXA9P31269 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.71□□□□□ -1.49
HOXA9P31269 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.71□□□□□ -1.49
HOXA9P31269 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA9P31269 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.71□□□□□ -1.49
HOXA9P31269 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA9P31269 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA9P31269 AL121886.1-201ENST00000358609 435 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXA9P31269 SNORA16A-201ENST00000384342 137 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 MIR585-201ENST00000384887 94 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 RNU11-201ENST00000387069 134 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HOXA9P31269 AL109941.1-201ENST00000401925 229 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA9P31269 SUMO2P1-206ENST00000445436 284 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 BX284632.1-201ENST00000478218 541 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXA9P31269 NDUFB5P1-201ENST00000508134 564 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.71□□□□□ -1.5
HOXA9P31269 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA9P31269 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 AC106730.2-201ENST00000566641 540 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXA9P31269 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 AL360012.1-201ENST00000602813 131 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 AC133644.2-201ENST00000608142 540 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 Mico1.1-201ENST00000611698 204 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 AL031658.2-201ENST00000616850 651 ntBASIC5.71□□□□□ -1.5
HOXA9P31269 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA9P31269 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HOXA9P31269 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA9P31269 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HOXA9P31269 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA9P31269 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA9P31269 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA9P31269 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA9P31269 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA9P31269 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA9P31269 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC140134.1-201ENST00000511830 3544 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HOXA9P31269 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXA9P31269 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC103591.2-201ENST00000265259 766 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC096921.1-201ENST00000411661 375 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXA9P31269 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXA9P31269 RIMKLBP2-201ENST00000424737 654 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 PSMD10P3-201ENST00000437000 448 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 KRT8P51-201ENST00000438938 274 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 RPL7P61-201ENST00000451721 751 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXA9P31269 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXA9P31269 SUMO2P4-201ENST00000504193 276 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 RN7SKP66-201ENST00000516681 231 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXA9P31269 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXA9P31269 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 OR11J2P-201ENST00000555298 907 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 AC116158.1-201ENST00000560231 2129 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC011447.4-201ENST00000587562 111 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 AC025857.2-201ENST00000602711 238 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXA9P31269 MIR6798-201ENST00000612887 67 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXA9P31269 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXA9P31269 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXA9P31269 OR4F13P-202ENST00000560066 2054 ntBASIC5.7□□□□□ -1.5
HOXA9P31269 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXA9P31269 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms