Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 AL391987.1-201ENST00000441025 200 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 NXT1P1-201ENST00000458481 316 ntBASIC6.18□□□□□ -1.42
BDNFP23560 RNU7-27P-201ENST00000459281 62 ntBASIC6.18□□□□□ -1.42
BDNFP23560 NENFP3-201ENST00000503735 313 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 IGHVIII-38-1-201ENST00000521454 282 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AC112191.2-201ENST00000522428 333 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.18□□□□□ -1.42
BDNFP23560 AL390334.1-201ENST00000556395 450 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AC012414.2-201ENST00000559474 187 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.18□□□□□ -1.42
BDNFP23560 MIR4420-201ENST00000583944 77 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC6.18□□□□□ -1.42
BDNFP23560 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 AL133406.3-201ENST00000606817 541 ntBASIC6.18□□□□□ -1.42
BDNFP23560 MIR6862-1-201ENST00000613016 70 ntBASIC6.18□□□□□ -1.42
BDNFP23560 MIR6862-2-201ENST00000614755 70 ntBASIC6.18□□□□□ -1.42
BDNFP23560 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.18□□□□□ -1.42
BDNFP23560 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.18□□□□□ -1.42
BDNFP23560 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
BDNFP23560 FTO-203ENST00000460382 1517 ntTSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
BDNFP23560 AC022164.1-201ENST00000568767 2673 ntBASIC6.18□□□□□ -1.42
BDNFP23560 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
BDNFP23560 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
BDNFP23560 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 AL359715.4-201ENST00000606629 1436 ntBASIC6.17□□□□□ -1.42
BDNFP23560 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 RN7SKP81-201ENST00000365603 331 ntBASIC6.17□□□□□ -1.42
BDNFP23560 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 RNU6-532P-201ENST00000384318 107 ntBASIC6.17□□□□□ -1.42
BDNFP23560 SNORA68.2-201ENST00000391263 128 ntBASIC6.17□□□□□ -1.42
BDNFP23560 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 AL121835.1-201ENST00000404250 354 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AK4P4-201ENST00000419465 646 ntBASIC6.17□□□□□ -1.42
BDNFP23560 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 AC127526.2-201ENST00000426436 775 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AL590623.1-201ENST00000427864 105 ntBASIC6.17□□□□□ -1.42
BDNFP23560 SUMO2P3-201ENST00000438311 288 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AC092013.1-201ENST00000438795 332 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AC064862.4-201ENST00000442180 334 ntBASIC6.17□□□□□ -1.42
BDNFP23560 HMGN1P36-201ENST00000446623 298 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AC009963.4-201ENST00000448535 339 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.17□□□□□ -1.42
BDNFP23560 RNU6-889P-201ENST00000517189 103 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.17□□□□□ -1.42
BDNFP23560 AC027544.3-201ENST00000535082 757 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AC012146.2-201ENST00000576545 416 ntBASIC6.17□□□□□ -1.42
BDNFP23560 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 AP001496.3-201ENST00000580230 913 ntBASIC6.17□□□□□ -1.42
BDNFP23560 SS18L2P2-201ENST00000583960 235 ntBASIC6.17□□□□□ -1.42
BDNFP23560 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.17□□□□□ -1.42
BDNFP23560 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.17□□□□□ -1.42
BDNFP23560 AC126175.1-201ENST00000617041 758 ntBASIC6.17□□□□□ -1.42
BDNFP23560 MIR6729-201ENST00000618194 65 ntBASIC6.17□□□□□ -1.42
BDNFP23560 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.17□□□□□ -1.42
BDNFP23560 AC022919.1-201ENST00000624979 626 ntBASIC6.17□□□□□ -1.42
BDNFP23560 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.17□□□□□ -1.42
BDNFP23560 AP001153.1-201ENST00000641024 338 ntBASIC6.17□□□□□ -1.42
BDNFP23560 MIR193BHG-214ENST00000641765 509 ntBASIC6.17□□□□□ -1.42
BDNFP23560 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
BDNFP23560 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.17□□□□□ -1.42
BDNFP23560 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.17□□□□□ -1.42
BDNFP23560 AC114876.1-201ENST00000490962 1366 ntBASIC6.17□□□□□ -1.42
BDNFP23560 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
BDNFP23560 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms