Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 PSAT1P4-201ENST00000466500 526 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RPS4XP1-201ENST00000482189 787 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RN7SL447P-201ENST00000494711 245 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RNU6-941P-201ENST00000516346 108 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 SCARNA20.4-201ENST00000516969 131 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 HMGB1P40-201ENST00000525121 540 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 OR4A43P-201ENST00000532938 908 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RPL10P14-201ENST00000565265 298 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RN7SL356P-201ENST00000582228 248 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AP000894.4-201ENST00000610185 483 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 MIR6133-201ENST00000617057 108 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC021766.1-201ENST00000624404 741 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 SAMMSON-209ENST00000641222 1100 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 CIR1P2-201ENST00000514821 1342 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 ZNF402P-201ENST00000404435 3100 ntBASIC5.46□□□□□ -1.53
LHX3Q9UBR4 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
LHX3Q9UBR4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 BX284613.1-201ENST00000452221 1641 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC092681.1-201ENST00000297369 291 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 U3.2-201ENST00000362981 210 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 RNU6-171P-201ENST00000384354 107 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 GAPDHP25-201ENST00000447061 1001 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AL451063.1-201ENST00000450164 1133 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 OR52Y1P-201ENST00000452418 828 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC024558.1-201ENST00000505008 528 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 PGAM1P13-201ENST00000507497 754 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC113398.2-201ENST00000507630 558 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC025423.2-201ENST00000537570 439 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC090022.1-201ENST00000546569 311 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC106730.2-201ENST00000566641 540 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC005341.1-201ENST00000571086 708 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 MIR6826-201ENST00000617808 98 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AC005899.7-201ENST00000618199 588 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AL157762.1-201ENST00000619612 415 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 MIR6837-201ENST00000620884 64 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 AL078621.3-201ENST00000623707 2042 ntBASIC5.46□□□□□ -1.54
LHX3Q9UBR4 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LHX3Q9UBR4 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 BCORP1-203ENST00000513194 5093 ntBASIC5.45□□□□□ -1.54
LHX3Q9UBR4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LHX3Q9UBR4 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms