Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RNA5SP319-201ENST00000362768 119 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 SNORA70-201ENST00000384436 135 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 GAPDHP42-201ENST00000406848 981 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 NANOGP4-201ENST00000427230 913 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 GAPDHP58-201ENST00000438477 1006 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 PTMAP6-201ENST00000439110 327 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AC015983.1-201ENST00000441577 373 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 OR7E116P-201ENST00000448529 957 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RN7SL583P-201ENST00000475692 287 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RN7SL727P-201ENST00000482164 296 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 DEFB109A-201ENST00000482450 265 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AP002981.1-201ENST00000517692 975 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 MRPS21P7-201ENST00000566937 238 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AC020656.2-201ENST00000613291 5309 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 MFSD8-219ENST00000641228 2559 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AL161756.3-201ENST00000641216 2071 ntBASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.67□□□□□ -1.5
TM9SF3Q9HD45 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 ADAM24P-201ENST00000398655 2101 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC130304.1-201ENST00000622942 2385 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC138907.8-201ENST00000623981 2256 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RNA5SP234-201ENST00000363916 119 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RNU1-146P-201ENST00000364015 165 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 U3.10-201ENST00000364459 214 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RPL35AP24-201ENST00000413846 330 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 NIFKP3-201ENST00000417799 865 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 NPM1P22-201ENST00000427761 952 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AL450023.1-201ENST00000450868 751 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RNU1-88P-201ENST00000459274 128 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC093763.2-201ENST00000505334 1223 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC074255.1-201ENST00000511259 501 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 OR10G5P-201ENST00000532733 358 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 DUX4L52-201ENST00000549363 777 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC004825.1-201ENST00000555068 586 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC019322.1-201ENST00000571869 389 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC060780.2-201ENST00000589047 198 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AC004948.1-201ENST00000609858 672 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 1018.2 ms