Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 AL137058.3-201ENST00000624531 3099 ntBASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 AC062022.1-201ENST00000451026 1684 ntBASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 AC119674.1-202ENST00000641333 1860 ntBASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.27
SMC1BQ8NDV3 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 RNU4-64P-201ENST00000410795 131 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AL024507.1-201ENST00000412741 274 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC106883.1-201ENST00000418805 562 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 RPS26P13-201ENST00000419030 330 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 MTND4LP13-201ENST00000425022 298 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 RPS3AP53-201ENST00000454716 778 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 RN7SL346P-201ENST00000491561 294 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC083795.1-201ENST00000491760 320 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 UBE2V1P12-201ENST00000503954 474 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AP003355.1-201ENST00000518956 587 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 NRBF2P4-201ENST00000520874 850 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC084759.1-201ENST00000561168 290 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AL022394.1-201ENST00000606979 292 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 AC005261.6-201ENST00000623072 1387 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 CR382285.2-201ENST00000624662 1495 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 PARP4P2-201ENST00000446672 3326 ntBASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMC1BQ8NDV3 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC007485.2-201ENST00000623493 1667 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 RNA5SP183-201ENST00000362452 119 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 RANP4-201ENST00000413361 655 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 RANP1-206ENST00000455094 651 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 HNRNPDLP2-201ENST00000455248 751 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC105918.1-201ENST00000474399 838 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 RPS17P15-201ENST00000475609 349 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 OR56A7P-201ENST00000524865 941 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC093014.1-201ENST00000548926 724 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC008759.3-201ENST00000613300 508 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AL132640.3-201ENST00000630473 177 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 AC013437.2-201ENST00000639587 677 ntBASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMC1BQ8NDV3 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
SMC1BQ8NDV3 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms