Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 RNF19BPY-201ENST00000458209 1550 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC008079.2-201ENST00000623543 20396 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC068870.1-201ENST00000563737 2455 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 GAPDHP24-201ENST00000328713 983 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 RN7SKP15-201ENST00000364742 309 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 RNA5SP131-201ENST00000365452 119 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 NPM1P40-201ENST00000412758 733 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 RNF10P1-201ENST00000418589 369 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 RPL34P3-201ENST00000421454 338 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 MTND6P12-201ENST00000428247 522 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC079807.1-201ENST00000429993 481 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 TMEM183AP1-205ENST00000432739 290 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 RPL36AP39-201ENST00000445859 318 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC144530.1-201ENST00000452862 555 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC117394.1-201ENST00000477323 567 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC109481.1-201ENST00000509173 282 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC090568.1-201ENST00000509499 856 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC084824.2-201ENST00000548906 345 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 IGBP1P1-201ENST00000554337 1009 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC135626.1-201ENST00000556983 435 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 MIR4311-201ENST00000580794 100 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 MIR3936-201ENST00000584304 110 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AL353729.2-201ENST00000605859 1249 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AP001962.1-201ENST00000624114 559 ntBASIC4.94□□□□□ -1.62
SKA3Q8IX90 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SKA3Q8IX90 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.94□□□□□ -1.62
SKA3Q8IX90 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AC104964.3-201ENST00000606115 2860 ntBASIC4.93□□□□□ -1.62
SKA3Q8IX90 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SKA3Q8IX90 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.93□□□□□ -1.62
SKA3Q8IX90 AL121886.1-201ENST00000358609 435 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms