Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR4697-201ENST00000582977 78 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 MIMT1-201ENST00000597105 1050 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AC015922.4-201ENST00000612568 690 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AL161912.4-201ENST00000623889 2468 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 YES1P1-201ENST00000418510 1628 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 SAMM50P1-201ENST00000455403 1399 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 RNU1-49P-201ENST00000363468 159 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 RNA5SP394-201ENST00000364216 119 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 MIR223-201ENST00000385204 110 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL645733.1-201ENST00000402250 217 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 RNF19BPX-201ENST00000426224 625 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 RPL5P2-201ENST00000429598 854 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC012075.1-201ENST00000436549 580 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 RPS12P17-201ENST00000438591 377 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL691517.1-201ENST00000440833 1235 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL445466.1-201ENST00000448432 357 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 MTND3P24-201ENST00000506306 329 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC097486.1-201ENST00000515331 210 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 OR4V1P-201ENST00000525394 1140 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 MIR3189-201ENST00000578735 73 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC027229.1-201ENST00000583887 253 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC012213.4-201ENST00000606457 354 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL591167.1-201ENST00000607321 456 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL512329.2-201ENST00000607350 548 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 RNU6-84P-201ENST00000607737 102 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL592494.3-201ENST00000609485 464 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 CASC19-264ENST00000641912 1184 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AC092111.2-201ENST00000611627 1414 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 AP001541.1-201ENST00000623322 1904 ntBASIC5.7□□□□□ -1.5
COL28A1Q2UY09 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL28A1Q2UY09 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC026951.1-201ENST00000559530 2459 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 MIR23A-201ENST00000385245 73 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC005042.1-201ENST00000393397 800 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC016397.1-201ENST00000412463 242 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 RPL35AP24-201ENST00000413846 330 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AL357078.2-201ENST00000416486 427 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.69□□□□□ -1.5
COL28A1Q2UY09 AC009506.2-201ENST00000420635 840 ntBASIC5.69□□□□□ -1.5
COL28A1Q2UY09 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms