Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 RNU6-618P-201ENST00000363518 112 ntBASIC5.34□□□□□ -1.55
SNX3O60493 RN7SKP286-201ENST00000410894 299 ntBASIC5.34□□□□□ -1.55
SNX3O60493 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 SETP9-201ENST00000423837 832 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX3O60493 VN1R20P-201ENST00000425215 966 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AL389925.1-201ENST00000432257 728 ntBASIC5.34□□□□□ -1.55
SNX3O60493 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SNX3O60493 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SNX3O60493 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 AL513343.1-201ENST00000451818 792 ntBASIC5.34□□□□□ -1.55
SNX3O60493 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SNX3O60493 AC073648.3-201ENST00000504939 925 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX3O60493 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 AC093591.2-201ENST00000565254 3843 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.34□□□□□ -1.55
SNX3O60493 AC068408.1-201ENST00000577406 1144 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AC011840.5-201ENST00000582125 771 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.34□□□□□ -1.55
SNX3O60493 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.34□□□□□ -1.55
SNX3O60493 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 KATNBL1P1-201ENST00000605192 748 ntBASIC5.34□□□□□ -1.55
SNX3O60493 GAPDHP41-201ENST00000613707 975 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AL354696.1-201ENST00000614652 497 ntBASIC5.34□□□□□ -1.55
SNX3O60493 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.34□□□□□ -1.55
SNX3O60493 AC089999.3-201ENST00000622440 577 ntBASIC5.34□□□□□ -1.55
SNX3O60493 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SNX3O60493 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
SNX3O60493 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
SNX3O60493 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.34□□□□□ -1.56
SNX3O60493 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.34□□□□□ -1.56
SNX3O60493 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.56
SNX3O60493 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.56
SNX3O60493 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.34□□□□□ -1.56
SNX3O60493 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
SNX3O60493 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.34□□□□□ -1.56
SNX3O60493 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 AF287957.1-201ENST00000607368 1595 ntBASIC5.33□□□□□ -1.56
SNX3O60493 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.33□□□□□ -1.56
SNX3O60493 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.33□□□□□ -1.56
SNX3O60493 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SNX3O60493 AL589826.1-201ENST00000340697 249 ntBASIC5.33□□□□□ -1.56
SNX3O60493 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 AL078599.1-201ENST00000402075 293 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AL354890.1-201ENST00000413730 346 ntBASIC5.33□□□□□ -1.56
SNX3O60493 MARK2P12-201ENST00000420129 585 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC114878.1-201ENST00000441166 358 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 PPIAP32-201ENST00000449940 472 ntBASIC5.33□□□□□ -1.56
SNX3O60493 TPRKBP1-201ENST00000456243 481 ntBASIC5.33□□□□□ -1.56
SNX3O60493 EIF3LP2-201ENST00000457262 807 ntBASIC5.33□□□□□ -1.56
SNX3O60493 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 AL591473.1-201ENST00000464297 313 ntBASIC5.33□□□□□ -1.56
SNX3O60493 RPSAP37-201ENST00000470913 821 ntBASIC5.33□□□□□ -1.56
SNX3O60493 RN7SL790P-201ENST00000474043 298 ntBASIC5.33□□□□□ -1.56
SNX3O60493 H3F3AP5-201ENST00000475267 429 ntBASIC5.33□□□□□ -1.56
SNX3O60493 RN7SL814P-201ENST00000487715 300 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.33□□□□□ -1.56
SNX3O60493 AP002453.1-201ENST00000492327 668 ntBASIC5.33□□□□□ -1.56
SNX3O60493 RN7SL57P-201ENST00000493687 290 ntBASIC5.33□□□□□ -1.56
SNX3O60493 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.33□□□□□ -1.56
SNX3O60493 HMGB3P16-201ENST00000508037 287 ntBASIC5.33□□□□□ -1.56
SNX3O60493 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.33□□□□□ -1.56
SNX3O60493 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 AC138938.1-201ENST00000515431 782 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 AC022360.1-201ENST00000521058 340 ntBASIC5.33□□□□□ -1.56
SNX3O60493 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.33□□□□□ -1.56
SNX3O60493 SNRPGP1-201ENST00000553864 222 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC006530.1-201ENST00000555980 571 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AL390726.5-202ENST00000564800 256 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 AC063977.5-201ENST00000601044 974 ntBASIC5.33□□□□□ -1.56
SNX3O60493 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.33□□□□□ -1.56
SNX3O60493 AC092681.3-201ENST00000609463 678 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC015819.1-201ENST00000613588 663 ntBASIC5.33□□□□□ -1.56
SNX3O60493 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.33□□□□□ -1.56
SNX3O60493 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.33□□□□□ -1.56
SNX3O60493 AC024884.1-201ENST00000620583 399 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AC020763.5-201ENST00000623298 430 ntBASIC5.33□□□□□ -1.56
SNX3O60493 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SNX3O60493 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SNX3O60493 QRSL1P1-201ENST00000400977 1540 ntBASIC5.33□□□□□ -1.56
SNX3O60493 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms