Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 IGBP1P1-201ENST00000554337 1009 ntBASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 AL118522.2-201ENST00000616045 615 ntBASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 FO681491.1-202ENST00000623392 737 ntBASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 AC016542.2-201ENST00000624201 619 ntBASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 AC073592.6-201ENST00000624271 415 ntBASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
TRIM49D1C9J1S8 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 Z95331.1-201ENST00000623075 23112 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 YES1P1-201ENST00000418510 1628 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 TCP11X1-202ENST00000622971 1372 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 RPS3AP2-201ENST00000407190 754 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 PCNPP4-201ENST00000414817 517 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 NOP56P2-201ENST00000447491 769 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 CBX1P5-201ENST00000475330 559 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 RN7SL814P-201ENST00000487715 300 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AC134669.1-201ENST00000581275 672 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AL499605.1-201ENST00000604628 403 ntBASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.34□□□□□ -1.55
TRIM49D1C9J1S8 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
TRIM49D1C9J1S8 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 RN7SKP153-201ENST00000365026 316 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC211486.3-201ENST00000412694 621 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC117434.1-201ENST00000419971 836 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AL662874.1-201ENST00000426065 230 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 BX119321.1-201ENST00000428912 797 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 GAPDHP34-201ENST00000432112 823 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AL138899.2-201ENST00000439139 499 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AL672138.1-201ENST00000450604 1015 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 LRRC37A14P-201ENST00000452297 462 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 RN7SL273P-201ENST00000481561 299 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 SCARNA16.4-201ENST00000516956 187 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 LSM3P2-201ENST00000551246 273 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC006349.1-201ENST00000555526 235 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC009852.2-201ENST00000567898 485 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 ADAM3B-201ENST00000569937 840 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AL583832.1-201ENST00000603227 784 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 AC011626.1-201ENST00000604710 562 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 SAMMSON-227ENST00000642114 1199 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 MUC2-202ENST00000613187 4845 ntBASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM49D1C9J1S8 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms