Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 RPL37AP8-201ENST00000494116 276 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 MTCO3P42-201ENST00000509488 518 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 MTCO3P39-201ENST00000514812 518 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 HMGB1P40-201ENST00000525121 540 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AP005403.1-201ENST00000579720 229 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 MIR7703-201ENST00000620784 77 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 AL359955.1-201ENST00000455242 3275 ntBASIC10.42□□□□□ -0.74
SHROOM4Q9ULL8 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AL078599.1-201ENST00000402075 293 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AL133388.1-201ENST00000404509 287 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 RNA5SP487-201ENST00000410186 122 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 FAM96AP1-201ENST00000430879 482 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AC027667.1-201ENST00000545814 304 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AC136624.4-201ENST00000573044 370 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AC209154.1-201ENST00000582156 337 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 HIRAP1-201ENST00000605318 787 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AP003789.1-201ENST00000617737 605 ntBASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
SHROOM4Q9ULL8 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AC092651.1-201ENST00000426110 312 ntBASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 CRIP1P1-201ENST00000427567 185 ntBASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 OR6C71P-201ENST00000432580 913 ntBASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 RSU1P1-201ENST00000453416 441 ntBASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AC073869.10-201ENST00000642016 354 ntBASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 CAST-202ENST00000325674 3356 ntTSL 5 BASIC10.4□□□□□ -0.74
SHROOM4Q9ULL8 AC010168.2-201ENST00000562691 5428 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 RNU1-149P-201ENST00000390870 161 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC093655.2-201ENST00000425735 631 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC020937.1-201ENST00000519677 1013 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC127381.1-201ENST00000555979 939 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AP005901.4-201ENST00000577336 569 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AP000769.2-201ENST00000602344 396 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC068790.4-201ENST00000602474 263 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 AC007114.2-201ENST00000576014 4281 ntBASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
SHROOM4Q9ULL8 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 OR55B1P-203ENST00000641518 2602 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC144833.1-201ENST00000567953 4089 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 NPM1P40-201ENST00000412758 733 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC234781.3-201ENST00000452540 973 ntBASIC10.38□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms