Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 OR51C1P-201ENST00000608504 942 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AP001437.1-201ENST00000608783 456 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 LINC00216-201ENST00000623548 1126 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC106730.3-201ENST00000624568 641 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC144833.1-201ENST00000567953 4089 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC133552.1-201ENST00000569988 4007 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 PROS2P-201ENST00000474651 1951 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC015689.2-201ENST00000528172 1738 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AL360270.2-201ENST00000562952 5985 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 QRSL1P1-201ENST00000400977 1540 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 RN7SKP81-201ENST00000365603 331 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 SNORA51.9-201ENST00000384295 124 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 MIR130A-201ENST00000385274 89 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 RN7SKP29-201ENST00000410957 272 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AL356968.2-201ENST00000412769 1257 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AL357078.2-201ENST00000416486 427 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 DPPA2P2-201ENST00000418220 897 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 IPPKP1-201ENST00000422501 768 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 NPM1P26-201ENST00000426339 738 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 PNKDP1-201ENST00000435914 430 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 DNAJA1P5-201ENST00000440278 943 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC105918.1-201ENST00000474399 838 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 RPS7P6-201ENST00000485777 579 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 NPM1P28-201ENST00000492269 840 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 OR7E157P-201ENST00000494376 911 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC138409.2-202ENST00000507274 458 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 GLUD1P3-202ENST00000508551 200 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC139365.2-201ENST00000517972 253 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 SEC11B-201ENST00000518383 499 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AP003396.4-201ENST00000527574 265 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC137627.1-201ENST00000545761 289 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC079905.1-201ENST00000549280 475 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC092332.1-201ENST00000563684 829 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 TEX41-218ENST00000596540 882 ntTSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC073575.2-201ENST00000614212 627 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AC006213.4-201ENST00000616184 634 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 AL109620.1-201ENST00000618738 1197 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 FO681491.1-202ENST00000623392 737 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 MIR1910-201ENST00000636955 80 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
NKX3-1Q99801 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 CR382285.2-201ENST00000624662 1495 ntBASIC4.94□□□□□ -1.62
NKX3-1Q99801 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
NKX3-1Q99801 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 177.2 ms